View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11590_low_1 (Length: 582)
Name: NF11590_low_1
Description: NF11590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11590_low_1 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 16 - 582
Target Start/End: Complemental strand, 42673164 - 42672593
Alignment:
| Q |
16 |
ataatgataaaagtgagtgactcggtaatttaaaataataatgaagaacttaccgaatcttggttgtcatctgatagggatatcctccgtggataagtct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42673164 |
ataatgataaaagtgagtgactcggtaatttaaaataataatgaagaacttaccgaatcttggttgtcatctgatagggatatcctccgtggataagtct |
42673065 |
T |
|
| Q |
116 |
ctctttgggacatacatcttgatcctattcttggatccnnnnnnngaccaaaggatccaccatcgctgcttaagcgcctccgtattttattgagtgattt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42673064 |
ctctttgggacatacatcttgatcctattcttgcatcctttttttgaccaaaggatccaccatcgctgcttaagcgcctccttattttattgagtgattt |
42672965 |
T |
|
| Q |
216 |
tctgatcaaacgt-----gcataatgaatcactaaattagggactaaacatcgacgaatattttttgtaagaactaaatatgatgcagctgtattttata |
310 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42672964 |
tctgatcaaacgtaacgtgcataatgaatcactaaattagggactaaacatcaacgaatattttttgtaagaactaaatatgatgcagctgtattttata |
42672865 |
T |
|
| Q |
311 |
gagaatgaaaacatatctaagtcttatatatttacctgtttaagtctttggtcaaataatctggctttggactagaaatagtaatggtttgggaaggagc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42672864 |
gagaatgaaaacatatctaagtcttatatatttacctgtttaagtctttggtcaaataatctggctttggactagaaatagtaatggtttgggaaggagc |
42672765 |
T |
|
| Q |
411 |
tgttgcttgaatactctggacttttcctcttgatataatatgcaccgtgcaagtctctggtagagacttcactaaacttgttggcacatctacatcttta |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42672764 |
tgttgcttgaatactctggacttttcctcttgatataatatgcaccgtgcaagtctctggtagagacttcactaaacttgttggcacatctacatcttta |
42672665 |
T |
|
| Q |
511 |
aatttcctgcattcaacattaatttattatgcaagaataccattaagagacatatgttttttggtttcttct |
582 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42672664 |
aatttcctgcattcaacattaatttattatgcaagaataccattaagagacatatgttttttggtttcttct |
42672593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University