View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11590_low_3 (Length: 269)
Name: NF11590_low_3
Description: NF11590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11590_low_3 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
| [»] chr8 (6 HSPs) |
| |
|
| [»] scaffold0604 (1 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
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| [»] chr7 (5 HSPs) |
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|
| [»] chr6 (1 HSPs) |
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| [»] scaffold0596 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 20425157 - 20424899
Alignment:
| Q |
12 |
atgaacctgaaaatgtttctgcacnnnnnnnn-cttagacttagacacctcaataaaaggctcttcttcagcaacagagcggttcttcaagtaattgata |
110 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||| |
|
|
| T |
20425157 |
atgaacctgaaaatgtttctgcaccttttttttcttagacttagacacctcaataaaaggctcatcttcagcaacagaacggttcttcaagtagttgata |
20425058 |
T |
|
| Q |
111 |
gctgcctctctttcttcctcatcagtatagacccgaggcacacttgtacaagcatcattgcctttcaaatatggttgcaaaatctctagatcatgagcaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||| |||||||||| | ||||||||||| |
|
|
| T |
20425057 |
gctgcctctctttcttcctcatcagtataaacctgaggcacacttgcacaagcatcattgcctttcaaatatggtcgcaaaatctccaaatcatgagcaa |
20424958 |
T |
|
| Q |
211 |
tgttaggatttaaaacctctttagaaaccatgacattgtaagaaccttaaccataccaa |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
20424957 |
tgttaggatttaaaacctctttagaaaccatgacattggaagaacctaaaccataccaa |
20424899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 50 - 269
Target Start/End: Original strand, 12402119 - 12402338
Alignment:
| Q |
50 |
cttagacacctcaataaaaggctcttcttcagcaacagagcggttcttcaagtaattgatagctgcctctctttcttcctcatcagtatagacccgaggc |
149 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||| || |
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|
| T |
12402119 |
cttagacacctcaataaatggctcttctctagcaagagagcggttcttcaagtagttgatagctgcctctctttcttcctcattagtataaacccgaagc |
12402218 |
T |
|
| Q |
150 |
acacttgtacaagcatcattgcctttcaaatatggttgcaaaatctctagatcatgagcaatgttaggatttaaaacctctttagaaaccatgacattgt |
249 |
Q |
| |
|
|||||| || |||||| ||| ||||||||||||| ||||||||||| | ||||| || || |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12402219 |
tcacttgcacgagcatccttgtctttcaaatatggctgcaaaatctccaagtcatgggcgatattaggatttaaaacatctttagaaaccatgacattgg |
12402318 |
T |
|
| Q |
250 |
aagaaccttaaccataccaa |
269 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
12402319 |
aagaactcaaaccataccaa |
12402338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 44 - 255
Target Start/End: Original strand, 27941519 - 27941730
Alignment:
| Q |
44 |
cttagacttagacacctcaataaaaggctcttcttcagcaacagagcggttcttcaagtaattgatagctgcctctctttcttcctcatcagtatagacc |
143 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| | | | || | | ||||||||||| ||||||||| |||||||||||||||||| ||||| ||| |
|
|
| T |
27941519 |
cttagacttagaaacctcaataaaaggttcttccttaatagcaaaatgattcttcaagtagttgatagctaactctctttcttcctcatctgtataaacc |
27941618 |
T |
|
| Q |
144 |
cgaggcacacttgtacaagcatcattgcctttcaaatatggttgcaaaatctctagatcatgagcaatgttaggatttaaaacctctttagaaaccatga |
243 |
Q |
| |
|
||||| |||| | |||||||| |||| |||||||||| || ||||||||| | ||||| ||| ||||||||||||||||| || ||||||||||||| |
|
|
| T |
27941619 |
tgaggctcactagcacaagcattattgtctttcaaatacggccacaaaatctccaaatcattagcgatgttaggatttaaaacatccttagaaaccatga |
27941718 |
T |
|
| Q |
244 |
cattgtaagaac |
255 |
Q |
| |
|
||||| |||||| |
|
|
| T |
27941719 |
cattggaagaac |
27941730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 30319173 - 30319117
Alignment:
| Q |
80 |
agcaacagagcggttcttcaagtaattgatagctgcctctctttcttcctcatcagt |
136 |
Q |
| |
|
|||| ||| ||||||| ||| ||||||||||| |||||||||||||| |||||||| |
|
|
| T |
30319173 |
agcagcagtgcggttcctcagataattgatagcggcctctctttcttcttcatcagt |
30319117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 44 - 269
Target Start/End: Original strand, 18188941 - 18189166
Alignment:
| Q |
44 |
cttagacttagacacctcaataaaaggctcttcttcagcaacagagcggttcttcaagtaattgatagctgcctctctttcttcctcatcagtatagacc |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||| ||| ||| |
|
|
| T |
18188941 |
cttagacttagacacctcaataaaaggctcttcttcagcaacagaacggttcttcaagtagttgatagctgccgctctttcttcctcatcagaataaacc |
18189040 |
T |
|
| Q |
144 |
cgaggcacacttgtacaagcatcattgcctttcaaatatggttgcaaaatctctagatcatgagcaatgttaggatttaaaacctctttagaaaccatga |
243 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |||||||||| || |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18189041 |
cgaggcacacttgtacaagcattattgcctttcaaatatggtcgcaaaatctccaggtcatgagcaatgttaggatttagaacctctttagaaaccatga |
18189140 |
T |
|
| Q |
244 |
cattgtaagaaccttaaccataccaa |
269 |
Q |
| |
|
|||| |||||||| ||||||||||| |
|
|
| T |
18189141 |
cattagaagaacctaaaccataccaa |
18189166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 50 - 269
Target Start/End: Complemental strand, 10866259 - 10866040
Alignment:
| Q |
50 |
cttagacacctcaataaaaggctcttcttcagcaacagagcggttcttcaagtaattgatagctgcctctctttcttcctcatcagtatagacccgaggc |
149 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10866259 |
cttagacacctcaataaatggctcttctctagcaagagagcggttcttcaagtagttgatagttgcctctctttcttcctcatcagtataaacccgaggc |
10866160 |
T |
|
| Q |
150 |
acacttgtacaagcatcattgcctttcaaatatggttgcaaaatctctagatcatgagcaatgttaggatttaaaacctctttagaaaccatgacattgt |
249 |
Q |
| |
|
|||||| |||| |||||||| |||||| ||| || ||||||| || | ||||| || ||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
10866159 |
tcacttgcacaaacatcattgtctttcagataaggccgcaaaatttccaagtcatgggcgatgttaggatttaaaacatctttagtaaccatgacattgg |
10866060 |
T |
|
| Q |
250 |
aagaaccttaaccataccaa |
269 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
10866059 |
aagaactcaaaccataccaa |
10866040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 51 - 269
Target Start/End: Complemental strand, 640008 - 639789
Alignment:
| Q |
51 |
ttagacacctcaataaaaggctcttcttcagcaacagagcggttcttcaagtaattgatagctgcctctctttcttcctcatcagtatagacccgaggca |
150 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||| | | ||||||||||| |||||||||||| ||||||||||||||||| |||| ||||||||| |
|
|
| T |
640008 |
ttagatacctcaataaaaggctcttcttcggcaacataatgattcttcaagtagttgatagctgcccctctttcttcctcatcaatataaacccgaggct |
639909 |
T |
|
| Q |
151 |
cacttgtacaagcatcattgcctttcaaatatggttgcaaaatctctagatcatgagcaatgttaggatttaaaacctctttagaaa-ccatgacattgt |
249 |
Q |
| |
|
|||||| ||||||||| ||| | ||||||||||| ||||| |||| | |||||||||||||||| ||||||||| |||||| ||| ||||||||||| |
|
|
| T |
639908 |
cacttgcacaagcatccttgtcgttcaaatatggccgcaaactctccaagtcatgagcaatgttagaatttaaaacatctttaaaaacccatgacattgg |
639809 |
T |
|
| Q |
250 |
aagaaccttaaccataccaa |
269 |
Q |
| |
|
|||||| | ||||||||||| |
|
|
| T |
639808 |
aagaacataaaccataccaa |
639789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 51 - 269
Target Start/End: Complemental strand, 825814 - 825595
Alignment:
| Q |
51 |
ttagacacctcaataaaaggctcttcttcagcaacagagcggttcttcaagtaattgatagctgcctctctttcttcctcatcagtatagacccgaggca |
150 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||| | | ||||||||||| |||||||||||| ||||||||||||||||| |||| ||||||||| |
|
|
| T |
825814 |
ttagatacctcaataaaaggctcttcttcggcaacataatgattcttcaagtagttgatagctgcccctctttcttcctcatcaatataaacccgaggct |
825715 |
T |
|
| Q |
151 |
cacttgtacaagcatcattgcctttcaaatatggttgcaaaatctctagatcatgagcaatgttaggatttaaaacctctttagaaa-ccatgacattgt |
249 |
Q |
| |
|
|||||| ||||||||| ||| | ||||||||||| ||||| |||| | |||||||||||||||| ||||||||| |||||| ||| ||||||||||| |
|
|
| T |
825714 |
cacttgcacaagcatccttgtcgttcaaatatggccgcaaactctccaagtcatgagcaatgttagaatttaaaacatctttaaaaacccatgacattgg |
825615 |
T |
|
| Q |
250 |
aagaaccttaaccataccaa |
269 |
Q |
| |
|
|||||| | ||||||||||| |
|
|
| T |
825614 |
aagaacataaaccataccaa |
825595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 51 - 269
Target Start/End: Original strand, 275841 - 276060
Alignment:
| Q |
51 |
ttagacacctcaataaaaggctcttcttcagcaacagagcggttcttcaagtaattgatagctgcctctctttcttcctcatcagtatagacccgaggca |
150 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||| | | ||||||||||| |||||||||||| ||||||||||||||||| |||| |||| |||| |
|
|
| T |
275841 |
ttagatacctcaataaaaggctcttcttcggcaacataatgattcttcaagtagttgatagctgcccctctttcttcctcatcaatataaacccaaggct |
275940 |
T |
|
| Q |
151 |
cacttgtacaagcatcattgcctttcaaatatggttgcaaaatctctagatcatgagcaatgttaggatttaaaacctctttagaaa-ccatgacattgt |
249 |
Q |
| |
|
|||||| ||||||||| ||| | ||||||||||| ||||| |||| | |||||||||||||||| ||||||||| |||||| ||| ||||||||||| |
|
|
| T |
275941 |
cacttgcacaagcatccttgtcgttcaaatatggccgcaaactctccaagtcatgagcaatgttagaatttaaaacatctttaaaaacccatgacattgg |
276040 |
T |
|
| Q |
250 |
aagaaccttaaccataccaa |
269 |
Q |
| |
|
|||||| | ||||||||||| |
|
|
| T |
276041 |
aagaacataaaccataccaa |
276060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 155 - 269
Target Start/End: Complemental strand, 12737394 - 12737280
Alignment:
| Q |
155 |
tgtacaagcatcattgcctttcaaatatggttgcaaaatctctagatcatgagcaatgttaggatttaaaacctctttagaaaccatgacattgtaagaa |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| | |||||| || |||| |||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
12737394 |
tgtacaagcatcattgcctttcaaatatggccacaaaatctccaagtcatgaacaccgttaagatttaaaacatctttagaaaccatgacattggaagaa |
12737295 |
T |
|
| Q |
255 |
ccttaaccataccaa |
269 |
Q |
| |
|
| | ||||||||||| |
|
|
| T |
12737294 |
cataaaccataccaa |
12737280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0604 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0604
Description:
Target: scaffold0604; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 50 - 269
Target Start/End: Complemental strand, 4542 - 4324
Alignment:
| Q |
50 |
cttagacacctcaataaaaggctcttcttcagcaacagagcggttcttcaagtaattgatagctgcctctctttcttcctcatcagtatagacccgaggc |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| || ||||||| ||| |||||||||||||||||||||||||||||| |||| || |||||| |
|
|
| T |
4542 |
cttagacacctcaataaaaggctcttcttcagcaagagaacgattcttcaggtagttgatagctgcctctctttcttcctcatcaatataaactcgaggc |
4443 |
T |
|
| Q |
150 |
acacttgtacaagcatcattgcctttcaaatatggttgcaaaatctctagatcatgagcaatgttaggatttaaaacctctttagaaaccatgacattgt |
249 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||| |||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4442 |
gcacttgcacaagcatcattgcctttc-aatatggccgcaaaatctccaagtcatgatcaatgttaggatttaaaacctctttagaaaccatgacattgg |
4344 |
T |
|
| Q |
250 |
aagaaccttaaccataccaa |
269 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
4343 |
aagaacctaaaccataccaa |
4324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 50 - 269
Target Start/End: Original strand, 31288571 - 31288795
Alignment:
| Q |
50 |
cttagacacctcaataaaaggctcttcttcagcaacagagcggttcttcaagtaattgatagctgcctctctttcttcctcatcagtatagacccgaggc |
149 |
Q |
| |
|
|||||||||||||||||||| |||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| || |||||| |
|
|
| T |
31288571 |
cttagacacctcaataaaagactcttccctagaaacagagcggttcttcaagtagttgatagctgcctctctttcttcctcataagtataaactcgaggc |
31288670 |
T |
|
| Q |
150 |
acacttgtacaagcatcattgcctttcaaatatggttgcaaaatctctagat------catgagcaatgttaggatttaaaacctctttagaaaccatga |
243 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||| |||||||||| | || ||||||| ||||||||||||||||| ||||||| |||||||| |
|
|
| T |
31288671 |
tcacttgcacaagcatcattgtctttcaaatatggtcgcaaaatctcca-atccaagccatgagcgatgttaggatttaaaacatctttagtaaccatga |
31288769 |
T |
|
| Q |
244 |
cattgtaagaaccttaaccataccaa |
269 |
Q |
| |
|
||||| |||||| ||||||||||| |
|
|
| T |
31288770 |
cattggaagaactcaaaccataccaa |
31288795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 50 - 269
Target Start/End: Original strand, 43805162 - 43805375
Alignment:
| Q |
50 |
cttagacacctcaataaaaggctcttcttcagcaacagagcggttcttcaagtaattgatagctgcctctctttcttcctcatcagtatagacccgaggc |
149 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||| |||||||||||| |||||| ||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
43805162 |
cttagacacctcaataaatggctcttcaatagcaacagagcagttcttcaagtagttgataactgcctctctttcttccccatcagtataaacccgaggc |
43805261 |
T |
|
| Q |
150 |
acacttgtacaagcatcattgcctttcaaatatggttgcaaaatctctagatcatgagcaatgttaggatttaaaacctctttagaaaccatgacattgt |
249 |
Q |
| |
|
||||| ||| | ||| |||| |||||||| |||||||||| | |||||||| ||||| || |||||||| |||| | ||| ||||||||| |
|
|
| T |
43805262 |
tcactt------gcacctttgtcttttaaatatggccgcaaaatctccaagtcatgagcgatgttggggtttaaaacatcttgggtaacaatgacattgg |
43805355 |
T |
|
| Q |
250 |
aagaaccttaaccataccaa |
269 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
43805356 |
aagaactcaaaccataccaa |
43805375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 62 - 269
Target Start/End: Complemental strand, 21408706 - 21408499
Alignment:
| Q |
62 |
aataaaaggctcttcttcagcaacagagcggttcttcaagtaattgatagctgcctctctttcttcctcatcagtatagacccgaggcacacttgtacaa |
161 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| |||||||| |||| ||||||||||||||| |||||||||||||| ||||||||| | |||| |||| |
|
|
| T |
21408706 |
aataaaagactcttctctagcaacagagcggttattcaagtagttgacagctgcctctctttcctcctcatcagtataaacccgaggctcgcttggacaa |
21408607 |
T |
|
| Q |
162 |
gcatcattgcctttcaaatatggttgcaaaatctctagatcatgagcaatgttaggatttaaaacctctttagaaaccatgacattgtaagaaccttaac |
261 |
Q |
| |
|
| |||||| ||||||||||||| |||||||||| | |||| ||| |||||||| |||||||| |||||||||||||||||||| |||||| | ||| |
|
|
| T |
21408606 |
gtgtcattgtctttcaaatatggccgcaaaatctccaagtcataagcgatgttagggtttaaaacatctttagaaaccatgacatttgaagaacttaaac |
21408507 |
T |
|
| Q |
262 |
cataccaa |
269 |
Q |
| |
|
|||||||| |
|
|
| T |
21408506 |
cataccaa |
21408499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 44 - 269
Target Start/End: Complemental strand, 26474166 - 26473944
Alignment:
| Q |
44 |
cttagacttagacacctcaataaaaggctcttcttcagcaacagagcggttcttcaagtaattgatagctgcctctctttcttcctcatcagtatagacc |
143 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| || | |||| || ||| ||||| ||||||| || |||||||||||||||||| ||||| ||| |
|
|
| T |
26474166 |
cttagacttagaaacctcaataaaaggttcttccctagtagcagaacgattc---aagtagttgatagttgtctctctttcttcctcatctgtataaacc |
26474070 |
T |
|
| Q |
144 |
cgaggcacacttgtacaagcatcattgcctttcaaatatggttgcaaaatctctagatcatgagcaatgttaggatttaaaacctctttagaaaccatga |
243 |
Q |
| |
|
|||||| |||| | ||| |||| ||| |||||||||| || |||||||||| | ||||||||| ||||||||||||||||| || ||||||||||||| |
|
|
| T |
26474069 |
cgaggctcactagcacatgcattattatctttcaaatacggccgcaaaatctccaaatcatgagcgatgttaggatttaaaacgtccttagaaaccatga |
26473970 |
T |
|
| Q |
244 |
cattgtaagaaccttaaccataccaa |
269 |
Q |
| |
|
||||| |||||| | || |||||||| |
|
|
| T |
26473969 |
cattggaagaacttaaatcataccaa |
26473944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 44 - 269
Target Start/End: Complemental strand, 26550606 - 26550384
Alignment:
| Q |
44 |
cttagacttagacacctcaataaaaggctcttcttcagcaacagagcggttcttcaagtaattgatagctgcctctctttcttcctcatcagtatagacc |
143 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| || | |||| || ||| ||||| ||||||| || |||||||||||||||||| ||||| ||| |
|
|
| T |
26550606 |
cttagacttagaaacctcaataaaaggttcttccctagtagcagaacgattc---aagtagttgatagttgtctctctttcttcctcatctgtataaacc |
26550510 |
T |
|
| Q |
144 |
cgaggcacacttgtacaagcatcattgcctttcaaatatggttgcaaaatctctagatcatgagcaatgttaggatttaaaacctctttagaaaccatga |
243 |
Q |
| |
|
|||||| |||| | ||| |||| ||| |||||||||| || |||||||||| | ||||||||| ||||||||||||||||| || ||||||||||||| |
|
|
| T |
26550509 |
cgaggctcactagcacatgcattattatctttcaaatacggccgcaaaatctccaaatcatgagcgatgttaggatttaaaacgtccttagaaaccatga |
26550410 |
T |
|
| Q |
244 |
cattgtaagaaccttaaccataccaa |
269 |
Q |
| |
|
||||| |||||| | || |||||||| |
|
|
| T |
26550409 |
cattggaagaacttaaatcataccaa |
26550384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 44 - 157
Target Start/End: Complemental strand, 49050267 - 49050154
Alignment:
| Q |
44 |
cttagacttagacacctcaataaaaggctcttcttcagcaacagagcggttcttcaagtaattgatagctgcctctctttcttcctcatcagtatagacc |
143 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
49050267 |
cttagtctttgacacctcaataaaaggctcttcttcggcaacagaacggttattcaagtagttgatagctgcctctctttgttcctcatcagtataaact |
49050168 |
T |
|
| Q |
144 |
cgaggcacacttgt |
157 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
49050167 |
cgaggctcacttgt |
49050154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 7627155 - 7627238
Alignment:
| Q |
66 |
aaaggctcttcttcagcaacagagcggttcttcaagtaattgatagctgcctctctttcttcctcatcagtatagacccgaggc |
149 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| ||||||||| | |||||| | ||||| ||||||||||| || |||||| |
|
|
| T |
7627155 |
aaaggctcttctgtagcagtagagcggttcttcaaataattgatatcagcctctatctcttcttcatcagtataaacgcgaggc |
7627238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 269
Target Start/End: Complemental strand, 49046996 - 49046886
Alignment:
| Q |
159 |
caagcatcattgcctttcaaatatggttgcaaaatctctagatcatgagcaatgttaggatttaaaacctctttagaaaccatgacattgtaagaacctt |
258 |
Q |
| |
|
|||||||| ||||| |||| |||||| ||||||||| | ||||| | |||||||||||||||||| | |||||||| ||||| |||| |||||| | |
|
|
| T |
49046996 |
caagcatccttgccgttcatatatggcctcaaaatctccaagtcatgtgtaatgttaggatttaaaacatatttagaaatcatgaaattggaagaacata |
49046897 |
T |
|
| Q |
259 |
aaccataccaa |
269 |
Q |
| |
|
|| |||||||| |
|
|
| T |
49046896 |
aatcataccaa |
49046886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 93 - 269
Target Start/End: Original strand, 1042856 - 1043032
Alignment:
| Q |
93 |
ttcttcaagtaattgatagctgcctctctttcttcctcatcagtatagacccgaggcacacttgtacaagcatcattgcctttcaaatatggttgcaaaa |
192 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||| ||||| ||||||||| |||| ||| |||| |||| |||||||||| || ||||| |
|
|
| T |
1042856 |
ttcttcaagtagttgataattgcctctctttcttcctcatttgtataaacccgaggctcactaacacatgcattattgtctttcaaatacggccgcaaat |
1042955 |
T |
|
| Q |
193 |
tc-tctagatcatgagcaatgttaggatttaaaacctctttagaaaccatgacattgtaagaaccttaaccataccaa |
269 |
Q |
| |
|
|| || || |||||||| ||||||| ||||||||| || ||||||||||||| |||| |||||| | |||||| |||| |
|
|
| T |
1042956 |
tcttcgag-tcatgagcgatgttagtatttaaaacatccttagaaaccatgatattggaagaacttgaaccatgccaa |
1043032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 15635476 - 15635397
Alignment:
| Q |
57 |
acctcaataaaaggctcttcttcagcaacagagcggttcttcaagtaattgatagctgcctctctttcttcctcatcagt |
136 |
Q |
| |
|
|||||||| || ||||||||| |||| ||| |||||| |||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15635476 |
acctcaatgaagggctcttctgaagcagtagaacggttcctcaaataattgatagcggcctctctttcttcctcatcagt |
15635397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 2141 - 2188
Alignment:
| Q |
102 |
taattgatagctgcctctctttcttcctcatcagtatagacccgaggc |
149 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||||||| ||||||||| |
|
|
| T |
2141 |
taattgatagcagccgctctctcttcctcatcagtatacacccgaggc |
2188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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