View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11590_low_5 (Length: 239)
Name: NF11590_low_5
Description: NF11590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11590_low_5 |
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| [»] scaffold0604 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 18189327 - 18189523
Alignment:
| Q |
1 |
aatatagttcttcctcaaggtttataacatcacccaccaacacattagttgttacttctttagacctcattatgtcacgaataataggatcttcatcagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | |
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|
| T |
18189327 |
aatatagttcttcctcaaggtttataacatcacccaccaacacattagttgttacttccttagatctcattatgtcacgaataataggatcttcatcaac |
18189426 |
T |
|
| Q |
101 |
cacagtattactatagccttgcacatgtctttttgagacattcttaacaagactatccttagtggacaccttttcacgtgcaattttgttggcaaga |
197 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
18189427 |
cacaatattactacagccttgcacatgtctttttgggacattcttaacaagactatccttagtggacaccttttcacgtgcaattttgttggtaaga |
18189523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 276224 - 276418
Alignment:
| Q |
1 |
aatatagttcttcctcaaggtttataacatcacccaccaacacattagttgttactt-ctttagacctcattatgtcacgaataataggatcttcatcag |
99 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||| ||||||||||||||| |||| |
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|
| T |
276224 |
aatatagttcttcctcaatgtttataacatcacccaccaacacattagttgttactttccttagaccacattatgtcaagaataataggatctttatcaa |
276323 |
T |
|
| Q |
100 |
ccacagtattactatagccttgcacatgtctttttgagacattcttaacaagactatccttagtggacaccttttcacgtgcaattttgttggca |
194 |
Q |
| |
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|||| |||||||| |||||||| |||||||||| | |||||||||||||||| ||| ||||| ||| |||||||| ||||||||||||||| |
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| T |
276324 |
gcacaatattactacagccttgctcatgtcttttagggacattcttaacaagattatatttagtaatcactttttcacgagcaattttgttggca |
276418 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 639625 - 639431
Alignment:
| Q |
1 |
aatatagttcttcctcaaggtttataacatcacccaccaacacattagttgttactt-ctttagacctcattatgtcacgaataataggatcttcatcag |
99 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||| ||||||||||||||| |||| |
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|
| T |
639625 |
aatatagttcttcctcaatgtttataacatcacccaccaacacattagttgttactttccttagaccacattatgtcaagaataataggatctttatcaa |
639526 |
T |
|
| Q |
100 |
ccacagtattactatagccttgcacatgtctttttgagacattcttaacaagactatccttagtggacaccttttcacgtgcaattttgttggca |
194 |
Q |
| |
|
|||| |||||||| |||||||| |||||||||| | |||||||||||||||| ||| ||||| ||| |||||||| ||||||||||||||| |
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| T |
639525 |
gcacaatattactacagccttgctcatgtcttttagggacattcttaacaagattatatttagtaatcactttttcacgagcaattttgttggca |
639431 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 825431 - 825237
Alignment:
| Q |
1 |
aatatagttcttcctcaaggtttataacatcacccaccaacacattagttgttactt-ctttagacctcattatgtcacgaataataggatcttcatcag |
99 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||| ||||||||||||||| |||| |
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|
| T |
825431 |
aatatagttcttcctcaatgtttataacatcacccaccaacacattagttgttactttccttagaccacattatgtcaagaataataggatctttatcaa |
825332 |
T |
|
| Q |
100 |
ccacagtattactatagccttgcacatgtctttttgagacattcttaacaagactatccttagtggacaccttttcacgtgcaattttgttggca |
194 |
Q |
| |
|
|||| |||||||| |||||||| |||||||||| | |||||||||||||||| ||| ||||| ||| |||||||| ||||||||||||||| |
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|
| T |
825331 |
gcacaatattactacagccttgctcatgtcttttagggacattcttaacaagattatatttagtaatcactttttcacgagcaattttgttggca |
825237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 10865862 - 10865760
Alignment:
| Q |
1 |
aatatagttcttcctcaaggtttataacatcacccaccaacacattagttgttacttctttagacctcattatgtcacgaataataggatcttcatcagc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||| ||||||| |||||||||||| |||| |||||||||| |||||||||||||||| || || |
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|
| T |
10865862 |
aatatagttcttcctcagggtttataacatcaaccacaaacacatcagttgttacttccgtagatttcattatgtcgagaataataggatcttcgtccgc |
10865763 |
T |
|
| Q |
101 |
cac |
103 |
Q |
| |
|
||| |
|
|
| T |
10865762 |
cac |
10865760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 12737122 - 12737032
Alignment:
| Q |
1 |
aatatagttcttcctcaaggtttataacatcacccaccaacacattagttgttacttctttagacctcattatgtcacgaataataggatcttcatca |
98 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| | ||||||| |||||||||||||||||| |||||||| ||||||||| |
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|
| T |
12737122 |
aatatagttcttccttaaggtttataacatcacccaccaaca-------tattacttccttagacctcattatgtcaaaaataatagagtcttcatca |
12737032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0604 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold0604
Description:
Target: scaffold0604; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 4 - 194
Target Start/End: Complemental strand, 4157 - 3967
Alignment:
| Q |
4 |
atagttcttcctcaaggtttataacatcacccaccaacacattagttgttacttctttagacctcattatgtcacgaataataggatcttcatcagccac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| ||| |
|
|
| T |
4157 |
atagttcttcctcaaggtttataacatcacccaccaacacattagttgttacttccttagaccttattatgtcacggataataggatcttcatcaaacac |
4058 |
T |
|
| Q |
104 |
agtattactatagccttgcacatgtctttttgagacattcttaacaagactatccttagtggacaccttttcacgtgcaattttgttggca |
194 |
Q |
| |
|
| |||||||| ||||||||||||| ||||| ||||||||||| |||| |||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4057 |
aatattactacagccttgcacatgccttttaaggacattcttaataagattatctttagtggacaccttttcacgagcaattttgttggca |
3967 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 20424735 - 20424533
Alignment:
| Q |
1 |
aatatagttcttcctcaaggtttataacatcacccaccaacacattagttgttacttctttagacctcattatgtcacgaataataggatcttcatcagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20424735 |
aatatagttcttcctcaaggtttataacatcacccaccaacacattagttgttacttccttagacctcattatgtcacgaataataggatcttcatcagc |
20424636 |
T |
|
| Q |
101 |
cacagtat---------tactatagccttgcacatgtctttttgagacattcttaacaagactatccttagtggacaccttttcacgtgcaattttgttg |
191 |
Q |
| |
|
|||| ||| ||||| ||||||||| ||| ||||| | || ||||||||||||| |||| |||||||||| ||||||||| |||||||||||| |
|
|
| T |
20424635 |
cacaatattagccacaatactacagccttgcaaatgccttttagggatattcttaacaagattatctttagtggacatcttttcacgagcaattttgttg |
20424536 |
T |
|
| Q |
192 |
gca |
194 |
Q |
| |
|
||| |
|
|
| T |
20424535 |
gca |
20424533 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 49046722 - 49046529
Alignment:
| Q |
1 |
aatatagttcttcctcaaggtttataacatcacccaccaacacattagttgttacttctttagacctcattatgtcacgaataataggatcttcatcagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||||||||| |||||||||| | |
|
|
| T |
49046722 |
aatatagttcttcctcaaggtttataacatcacccaccaacacattagttgttactttcttaaaccttattatgtcaagaataatagaatcttcatcaac |
49046623 |
T |
|
| Q |
101 |
cacagtattactatagccttgcacatgtctttttgagacattcttaacaagactatccttagtggacaccttttcacgtgcaattttgttggca |
194 |
Q |
| |
|
|||| |||||||| | ||||||||||| ||||| | |||||||||||||| | |||| |||||| |||||||||||| ||||||||||||||| |
|
|
| T |
49046622 |
cacaatattactacaaccttgcacatgccttttagggacattcttaacaaaattatctttagtgatcaccttttcacgagcaattttgttggca |
49046529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 26473780 - 26473686
Alignment:
| Q |
1 |
aatatagttcttcctcaaggtttataacatcacccaccaacacattagttgttacttctttagacctcattatgtcacgaataataggatcttca |
95 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| | ||||||||||| ||||||||||| || || |||||||| ||| ||||||||||||||||| |
|
|
| T |
26473780 |
aatatagttcttcctcgaggtttaaaacatccctcaccaacacatatgttgttacttccttggatctcattatatcaagaataataggatcttca |
26473686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 26550220 - 26550126
Alignment:
| Q |
1 |
aatatagttcttcctcaaggtttataacatcacccaccaacacattagttgttacttctttagacctcattatgtcacgaataataggatcttca |
95 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| | ||||||||||| ||||||||||| || || |||||||| ||| ||||||||||||||||| |
|
|
| T |
26550220 |
aatatagttcttcctcgaggtttaaaacatccctcaccaacacatatgttgttacttccttggatctcattatatcaagaataataggatcttca |
26550126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 43805533 - 43805638
Alignment:
| Q |
1 |
aatatagttcttcctcaaggtttataacatcacccaccaacacattagttgttacttctttagacctcattatgtcacgaataataggatcttcatcagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| | |||||||| ||||||||| ||| | |||||||||||| |||||||||||||||| || || |
|
|
| T |
43805533 |
aatatagttcttcctcaaggtttataacatcaaccacaagcacattaggtgttacttccttatatctcattatgtcaagaataataggatcttcgtccgc |
43805632 |
T |
|
| Q |
101 |
cacagt |
106 |
Q |
| |
|
|||||| |
|
|
| T |
43805633 |
cacagt |
43805638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 194
Target Start/End: Complemental strand, 21408334 - 21408134
Alignment:
| Q |
2 |
atatagttcttcctcaaggtttataacatcacccaccaacacat--tagttgttacttctttagacctcattatgtcacgaataataggatcttcatcag |
99 |
Q |
| |
|
|||||||||||||| | |||||||||||||| | || ||||||| ||||| ||||||| ||||| ||||||||||| ||||||| |||||| || |
|
|
| T |
21408334 |
atatagttcttcctaatggtttataacatcaacgacaaacacattatagttcttacttccttagatctcattatgtcgacaataatatgatctttgtcca |
21408235 |
T |
|
| Q |
100 |
ccacagtattactatagccttgca------catgtctttttgagacattcttaacaagactatccttagtggacaccttttcacgtgcaattttgttggc |
193 |
Q |
| |
|
||||| | |||||| | |||||| |||| ||||| | |||||||||||| || |||| ||||| | |||||||||||| |||||| ||||||| |
|
|
| T |
21408234 |
ccacaattttactacggtcttgcacttgaccatgccttttaggaacattcttaacatgattatctttagttgtcaccttttcacgagcaattatgttggc |
21408135 |
T |
|
| Q |
194 |
a |
194 |
Q |
| |
|
| |
|
|
| T |
21408134 |
a |
21408134 |
T |
|
Back To:
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