View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11590_low_6 (Length: 225)

Name: NF11590_low_6
Description: NF11590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11590_low_6
NF11590_low_6
[»] chr8 (2 HSPs)
chr8 (82-210)||(203236-203363)
chr8 (82-210)||(318073-318200)
[»] chr2 (2 HSPs)
chr2 (113-210)||(3204033-3204130)
chr2 (20-63)||(3203956-3203999)
[»] chr1 (2 HSPs)
chr1 (90-210)||(16450220-16450339)
chr1 (90-210)||(16459795-16459915)
[»] chr4 (1 HSPs)
chr4 (89-166)||(8160877-8160954)
[»] chr7 (1 HSPs)
chr7 (65-210)||(25904146-25904274)


Alignment Details
Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 82 - 210
Target Start/End: Complemental strand, 203363 - 203236
Alignment:
Q  82 aaactctctccatcctcaaactcttgtctaaaacattatggtttggtttactcattttctacttcaattgcatttccactccagatcacttttgtttgat 181  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||  | ||| | |||||||||||    
T  203363 aaactgtctccatcctcacactcttgtctaaaacattatggtttggtttactcaatttctacttcaattgcatcttcacatctgataatttttgtttgat 203264  T
Q  182 atttgtatggacaatttttaattcaaaat 210  Q
    ||||||||||| ||||||| |||||||||    
T  203263 atttgtatgga-aattttttattcaaaat 203236  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 82 - 210
Target Start/End: Complemental strand, 318200 - 318073
Alignment:
Q  82 aaactctctccatcctcaaactcttgtctaaaacattatggtttggtttactcattttctacttcaattgcatttccactccagatcacttttgtttgat 181  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||  | ||| | |||||||||||    
T  318200 aaactgtctccatcctcacactcttgtctaaaacattatggtttggtttactcaatttctacttcaattgcatcttcacatctgataatttttgtttgat 318101  T
Q  182 atttgtatggacaatttttaattcaaaat 210  Q
    ||||||||||| ||||||| |||||||||    
T  318100 atttgtatgga-aattttttattcaaaat 318073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 113 - 210
Target Start/End: Original strand, 3204033 - 3204130
Alignment:
Q  113 aacattatggtttggtttactcattttctacttcaattgcatttccactccagatcacttttgtttgatatttgtatggacaatttttaattcaaaat 210  Q
    ||||||||||||||||||||||| |||||||| |||||| || |||||| ||||| |||||||||||||||||||||||||||||||| |||||||||    
T  3204033 aacattatggtttggtttactcaatttctactacaattgaatctccacttcagataacttttgtttgatatttgtatggacaattttttattcaaaat 3204130  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 3203956 - 3203999
Alignment:
Q  20 aggatctaatctcatctctttgcaattcctttctttctctctcc 63  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  3203956 aggatctaatttcatctctttgcaattcctttctttctctctcc 3203999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 90 - 210
Target Start/End: Complemental strand, 16450339 - 16450220
Alignment:
Q  90 tccatcctcaaactcttgtctaaaacattatggtttggtttactcattttctacttcaattgcatttccactccagatcacttttgtttgatatttgtat 189  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| | |||  | ||| | |||||||||||||||||||    
T  16450339 tccatcctcacactcttgtctaaaccattatggtttggtttactcaatttctacttcaattgcatcttcacatctgataatttttgtttgatatttgtat 16450240  T
Q  190 ggacaatttttaattcaaaat 210  Q
    ||| ||||||| |||||||||    
T  16450239 gga-aattttttattcaaaat 16450220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 90 - 210
Target Start/End: Complemental strand, 16459915 - 16459795
Alignment:
Q  90 tccatcctcaaactcttgtctaaaacattatggtttggtttactcattttctacttcaattgcatttccactccagatcacttttgtttgatatttgtat 189  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| | |||  | ||| | |||||||||||||||||||    
T  16459915 tccatcctcacactcttgtctaaaccattatggtttggtttactcaatttctacttcaattgcatcttcacatctgataatttttgtttgatatttgtat 16459816  T
Q  190 ggacaatttttaattcaaaat 210  Q
    ||| | |||||| ||||||||    
T  16459815 ggaaattttttatttcaaaat 16459795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 8160877 - 8160954
Alignment:
Q  89 ctccatcctcaaactcttgtctaaaacattatggtttggtttactcattttctacttcaattgcatttccactccaga 166  Q
    ||||||||||| ||| |||| ||||| |||||||||||||||||||| ||||||||||||||||||  ||||||||||    
T  8160877 ctccatcctcacactattgtttaaaatattatggtttggtttactcaatttctacttcaattgcatcaccactccaga 8160954  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 210
Target Start/End: Original strand, 25904146 - 25904274
Alignment:
Q  65 ctgcatttagggcaagaaaactctctccatcctcaaactcttgtctaaaacattatggtttggtttactcattttctacttcaattgcatttccactcca 164  Q
    ||||||||| |  ||||||||| |||||||||||| | |||||||||||| ||||||||||||||||||||                 ||| |||||| |    
T  25904146 ctgcatttacgcaaagaaaactgtctccatcctcacattcttgtctaaaatattatggtttggtttactca-----------------attgccactcta 25904228  T
Q  165 gatcacttttgtttgatatttgtatggacaatttttaattcaaaat 210  Q
    ||| |||||||||||||||||||||||||||||||| |||||||||    
T  25904229 gataacttttgtttgatatttgtatggacaattttttattcaaaat 25904274  T

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