View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11591_high_2 (Length: 453)

Name: NF11591_high_2
Description: NF11591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11591_high_2
NF11591_high_2
[»] chr4 (29 HSPs)
chr4 (9-434)||(570070-570495)
chr4 (114-434)||(1524441-1524758)
chr4 (195-433)||(553384-553622)
chr4 (194-385)||(7307764-7307955)
chr4 (186-385)||(7225887-7226086)
chr4 (111-385)||(8187095-8187369)
chr4 (264-385)||(8184034-8184155)
chr4 (193-385)||(1537771-1537963)
chr4 (283-385)||(1548428-1548530)
chr4 (339-433)||(1600468-1600562)
chr4 (123-364)||(640748-640989)
chr4 (187-385)||(644728-644925)
chr4 (196-385)||(546819-547008)
chr4 (280-385)||(1513411-1513516)
chr4 (304-385)||(1519146-1519227)
chr4 (76-385)||(12121461-12121770)
chr4 (193-385)||(1489365-1489557)
chr4 (258-385)||(1552771-1552898)
chr4 (121-242)||(55505252-55505373)
chr4 (54-166)||(3438786-3438898)
chr4 (339-385)||(532238-532284)
chr4 (278-384)||(558486-558592)
chr4 (215-433)||(55908684-55908902)
chr4 (339-380)||(659758-659799)
chr4 (330-385)||(1545813-1545868)
chr4 (111-166)||(6006148-6006203)
chr4 (330-431)||(12116533-12116634)
chr4 (344-433)||(53761728-53761817)
chr4 (397-433)||(371027-371063)
[»] chr8 (7 HSPs)
chr8 (177-434)||(21235445-21235702)
chr8 (208-385)||(27922426-27922603)
chr8 (209-385)||(18315277-18315453)
chr8 (122-381)||(34936171-34936430)
chr8 (57-401)||(32151068-32151412)
chr8 (187-385)||(28246299-28246495)
chr8 (215-385)||(17636405-17636574)
[»] chr6 (23 HSPs)
chr6 (298-406)||(12102274-12102382)
chr6 (144-238)||(12102160-12102254)
chr6 (215-428)||(7119082-7119295)
chr6 (273-433)||(11936231-11936391)
chr6 (273-433)||(11948211-11948371)
chr6 (195-428)||(6394769-6395002)
chr6 (202-403)||(6423129-6423330)
chr6 (215-428)||(7131560-7131773)
chr6 (215-382)||(6415891-6416058)
chr6 (274-385)||(9411339-9411450)
chr6 (208-385)||(6603206-6603383)
chr6 (280-385)||(6432151-6432256)
chr6 (296-385)||(28935055-28935144)
chr6 (202-433)||(6402772-6403003)
chr6 (217-385)||(7994186-7994354)
chr6 (78-122)||(12102116-12102160)
chr6 (195-383)||(14820598-14820786)
chr6 (345-428)||(6426566-6426649)
chr6 (280-434)||(6409996-6410150)
chr6 (211-385)||(6589327-6589501)
chr6 (297-383)||(14802343-14802429)
chr6 (338-375)||(6594620-6594657)
chr6 (215-383)||(14818307-14818475)
[»] chr3 (8 HSPs)
chr3 (111-433)||(51113737-51114059)
chr3 (178-407)||(51120875-51121104)
chr3 (215-433)||(13470688-13470906)
chr3 (273-385)||(1657234-1657346)
chr3 (215-385)||(51764444-51764614)
chr3 (123-242)||(514875-514994)
chr3 (345-383)||(33714861-33714899)
chr3 (397-433)||(514684-514720)
[»] chr5 (5 HSPs)
chr5 (220-382)||(41901542-41901704)
chr5 (226-385)||(41889558-41889717)
chr5 (217-385)||(32267402-32267570)
chr5 (280-382)||(37937877-37937979)
chr5 (330-383)||(38267562-38267615)
[»] chr2 (4 HSPs)
chr2 (114-383)||(45245091-45245360)
chr2 (121-313)||(44575571-44575763)
chr2 (275-385)||(32785776-32785886)
chr2 (215-383)||(1037670-1037838)
[»] chr1 (4 HSPs)
chr1 (339-433)||(19468455-19468549)
chr1 (123-356)||(7554321-7554554)
chr1 (338-380)||(9586687-9586729)
chr1 (345-385)||(52082636-52082676)
[»] chr7 (2 HSPs)
chr7 (195-385)||(15092155-15092345)
chr7 (218-433)||(10614521-10614736)


Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 9 - 434
Target Start/End: Original strand, 570070 - 570495
Alignment:
Q  9 agcagagaaggcaaacttcagcagaagaaatgcaaaatactagccgagaaggcatacatgacccaagaagagttccctcttgttattgttgaaacgataa 108  Q
    ||||||||||| ||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||    
T  570070 agcagagaaggaaaacttcggcagaagagttgcaaaatactagccgagaaggcatacatgacccaagaagagctccctcttgttgttgttgaaacggtaa 570169  T
Q  109 cgaggtggaacagttatctttctcaatgatggtcttgataatatcatcgagtcaacaatatttttatgcactttatagcagttcttcaaattgatctccc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  570170 cgaggtggaacagttatctttctcaatgatggtcttgataatatcatcgagtcaacaatatttttatgcactttatagcagttcttcaaattgatctccc 570269  T
Q  209 tcagtcgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttga 308  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  570270 tcagttgtgtgcagttttctaccacatgattcacgcctcttttagtaacataataacaatgctcaagtaacagttgcaaaagcccgcgacaactctttga 570369  T
Q  309 aatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactgcacgcagtttcacttttgag 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||||||||||||    
T  570370 aatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctcgagtttgagaacttcaaagttcaatccacgcagtttcacttttgag 570469  T
Q  409 cagtgagctaagttcaaatgcctaag 434  Q
    ||||||||||||||||||||||||||    
T  570470 cagtgagctaagttcaaatgcctaag 570495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 114 - 434
Target Start/End: Complemental strand, 1524758 - 1524441
Alignment:
Q  114 tggaacagttatctttctcaatgatggtcttgataatatcatcgagtcaacaatatttttatgcactttatagcagttcttcaaattgatctccctcagt 213  Q
    ||||||| |||||| ||||||||||||||||||||||| ||| ||| ||||||   |   ||| |||||| | ||   | ||||||| ||||| ||||||    
T  1524758 tggaacaattatctctctcaatgatggtcttgataatagcattgaggcaacaaagctagcatgaactttacaacaacccctcaaattaatctctctcagt 1524659  T
Q  214 cgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttgaaatca 313  Q
     ||||||||||||||| ||||| |||||| || || |  ||||||||| ||| | |  ||| |||||||||||||||||| |||||||||| ||| ||||    
T  1524658 tgtgtgcagttttctatcacataattcactcccctctctgtgacataacaactacg--caa-taacagttgcaaaagcccacgacaactctgtgagatca 1524562  T
Q  314 gatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactgcacgcagtttcacttttgagcagtg 413  Q
     |||||||  ||| | |||||| | ||||  |||||| |||||||||||||  ||||||||||||||||||| | || | ||||  | ||| || ||||     
T  1524561 tatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaaagttcattccatgaagttctattttagaacagtt 1524462  T
Q  414 agctaagttcaaatgcctaag 434  Q
     ||||||||||||||||||||    
T  1524461 ggctaagttcaaatgcctaag 1524441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 195 - 433
Target Start/End: Original strand, 553384 - 553622
Alignment:
Q  195 caaattgatctccctcagtcgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccg 294  Q
    ||||| |||||| || ||| |||||||||||||||||||||||||||| ||| | |  ||||||| |  |||||     |  |||||||||||||||||     
T  553384 caaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgacatcactacaataaaacaacaacagttgcaaaagccca 553483  T
Q  295 cgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactgcacgca 394  Q
      ||||||||||||||||| ||  ||| |||| | |||||||| |||| |||||||||||||||||||||||||| |||||| |||||||| || ||| |    
T  553484 gaacaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaagttcaatgtacgta 553583  T
Q  395 gtttcacttttgagcagtgagctaagttcaaatgcctaa 433  Q
      |||||| |||| ||| | | |||||||||||| ||||    
T  553584 acttcactcttgaacagcgggttaagttcaaatgtctaa 553622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 194 - 385
Target Start/End: Original strand, 7307764 - 7307955
Alignment:
Q  194 tcaaattgatctccctcagtcgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagccc 293  Q
    |||||||||| ||||||||| | |||||||||||||||||||| ||||  ||  |  | ||||||  | |||||  ||| |||||||| ||||||||||     
T  7307764 tcaaattgatttccctcagttgcgtgcagttttctaccacatgcttcaatccagtcatcgtgacaataaaacaaccttccagtaacaggtgcaaaagcct 7307863  T
Q  294 gcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 385  Q
     | |||||||||||| |||| |   ||| |||| | ||||||| ||||||||||||||||||| ||||||| ||||||||||| ||||||||    
T  7307864 acaacaactctttgagatcatacgtagtgcttcatcatcaacttctgtatatgacaagttcaatacctccaatttgggaactttaaagttca 7307955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 186 - 385
Target Start/End: Complemental strand, 7226086 - 7225887
Alignment:
Q  186 gcagttcttcaaattgatctccctcagtcgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgc 285  Q
    ||||||||||||||||||||| |||||| |  |||||||||||||||| || ||||  ||  | |  ||||| | | |||||  ||| ||||| ||||||    
T  7226086 gcagttcttcaaattgatctctctcagttgcttgcagttttctaccacgtgcttcaatcccttctcggtgacctcaaaacaactttccagtaatagttgc 7225987  T
Q  286 aaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 385  Q
    ||||| || | |||||||||||| |||| |   ||| ||| || |||||||| ||||| |||||||||||| ||||||| || | |||||||||||||||    
T  7225986 aaaagtccacaacaactctttgatatcacacgaagtcctttgtcatcaactcttgtatgtgacaagttcaagacctccaattcgagaacttcaaagttca 7225887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 111 - 385
Target Start/End: Complemental strand, 8187369 - 8187095
Alignment:
Q  111 aggtggaacagttatctttctcaatgatggtcttgataatatcatcgagtcaacaatatttttatgcactttatagcagttcttcaaattgatctccctc 210  Q
    |||||| ||| ||||||||||||  ||||| ||||| ||||||||||||||||||| ||    |||||| |||||||||  | ||| |||||  ||  ||    
T  8187369 aggtgggacaattatctttctcagcgatggccttgaaaatatcatcgagtcaacaacatcaggatgcacattatagcagcgcctcagattgacttctgtc 8187270  T
Q  211 agtcgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttgaaa 310  Q
    ||| | |||||||||| ||||||||   |||| ||  |    ||||| | |  ||||| ||| |||||||  ||||||||||| | ||||||||||||||    
T  8187269 agttgcgtgcagttttttaccacatccatcactcccttccctgtgacgttacgacaattttccagtaacaactgcaaaagcccacaacaactctttgaaa 8187170  T
Q  311 tcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 385  Q
    |   ||| |||  ||  | |||||||| ||||| |||||||||||||||||||||||||| || |||||||||||    
T  8187169 ttgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttca 8187095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 385
Target Start/End: Complemental strand, 8184155 - 8184034
Alignment:
Q  264 acaatgttcaagtaacagttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctcc 363  Q
    ||||| ||| |||||||||| ||||||||| | |||||||||||| ||   ||||||| ||   | |||||||| ||||| ||||||||||||||||||     
T  8184155 acaattttccagtaacagttccaaaagcccacaacaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctct 8184056  T
Q  364 agtttgggaacttcaaagttca 385  Q
    ||||| ||||||||||||||||    
T  8184055 agtttcggaacttcaaagttca 8184034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 193 - 385
Target Start/End: Complemental strand, 1537963 - 1537771
Alignment:
Q  193 ttcaaattgatctccctcagtcgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcc 292  Q
    |||||||||||||| || ||| | ||||| ||||||| |||||  ||||| ||  | |  ||||||  ||||||| |||| ||||| |||||||||||||    
T  1537963 ttcaaattgatctctcttagttgagtgcatttttctagcacatacttcactcccttctgtgtgacaagataacaaagttccagtaaaagttgcaaaagcc 1537864  T
Q  293 cgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 385  Q
    | ||||||| |||||| || | | | |||  || || || |||   ||||||||||||||||||||| || ||||||||||||||||||||||    
T  1537863 cacgacaacactttgagattacacacagtgttttgtcattaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttca 1537771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 385
Target Start/End: Complemental strand, 1548530 - 1548428
Alignment:
Q  283 tgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagt 382  Q
    ||||||||||| | |||||||||||| |||| || ||||  ||| | |||||  | ||||| ||||||||||||||||||||||||||||| ||||||||    
T  1548530 tgcaaaagcccacaacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 1548431  T
Q  383 tca 385  Q
    |||    
T  1548430 tca 1548428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 433
Target Start/End: Original strand, 1600468 - 1600562
Alignment:
Q  339 tgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactgcacgcagtttcacttttgagcagtgagctaagttcaaatgcctaa 433  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||| | | ||||| |||| | |||| || || |||||||||||||| ||||    
T  1600468 tgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggctaagttcaaatgtctaa 1600562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 123 - 364
Target Start/End: Original strand, 640748 - 640989
Alignment:
Q  123 tatctttctcaatgatggtcttgataatatcatcgagtcaacaatatttttatgcactttatagcagttcttcaaattgatctccctcagtcgtgtgcag 222  Q
    |||||||||||||||||| ||||| |||| ||| |||||||| | |||   || ||||||||  ||   ||| ||||||| ||| || | |  | |||||    
T  640748 tatctttctcaatgatggccttgaaaataccattgagtcaacgacattagcattcactttattacaaccctttaaattgacctctcttaattctttgcag 640847  T
Q  223 ttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttgaaatcagatagagtt 322  Q
    |||||||||||||||||||| ||  | || || ||||||| ||||| ||| |||||||| |||||||| || || ||| |||||||  |||  ||||||     
T  640848 ttttctaccacatgattcactcccttctttgttacataatgacaatcttccagtaacagatgcaaaagaccacggcaattctttgaggtcacgtagagtg 640947  T
Q  323 cttcgttatcaactcctgtatatgacaagttcaacacctcca 364  Q
     ||| | ||||||   ||||| ||||||||||||||||||||    
T  640948 tttcatcatcaacgtttgtatctgacaagttcaacacctcca 640989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 187 - 385
Target Start/End: Original strand, 644728 - 644925
Alignment:
Q  187 cagttcttcaaattgatctccctcagtcgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgca 286  Q
    |||| |||||||| |||||| |||||| ||||||| ||||| |||||||| ||||| ||| | |  ||||||   | ||||  || |||| |||||||||    
T  644728 cagtacttcaaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagttgca 644827  T
Q  287 aaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 385  Q
     ||||||||  ||||||||||| |||| ||| | |  ||  |  | ||||| |||| |||||||||  |||||||||||||||||||||||||||||||    
T  644828 caagcccgctgcaactctttgagatcaaataaa-tgatttatcgtaaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttca 644925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 385
Target Start/End: Original strand, 546819 - 547008
Alignment:
Q  196 aaattgatctccctcagtcgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgc 295  Q
    ||||||||||| || |||  |||||||||||||| |||||| ||||| ||  | |  ||||||| | |||| | ||| ||||||| || ||||||||| |    
T  546819 aaattgatctctcttagttttgtgcagttttctagcacatgtttcactcccttctctgtgacatgaaaacattcttccagtaacaattccaaaagcccac 546918  T
Q  296 gacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 385  Q
     |||||||||||| |||| |||||||  ||| | ||  ||   ||||  ||||||||||| |||||||| ||| ||||||||||||||||    
T  546919 aacaactctttgagatcacatagagtgtttcatcattgacaattgtacgtgacaagttcaccacctccaatttaggaacttcaaagttca 547008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 385
Target Start/End: Complemental strand, 1513516 - 1513411
Alignment:
Q  280 agttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaa 379  Q
    |||||||||||||| ||||||| |||||| || |  ||||||  ||| | ||||||   |||| |||||||||||||||| || ||||||||||||||||    
T  1513516 agttgcaaaagcccacgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaa 1513417  T
Q  380 agttca 385  Q
    ||||||    
T  1513416 agttca 1513411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 385
Target Start/End: Complemental strand, 1519227 - 1519146
Alignment:
Q  304 tttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 385  Q
    ||||| |||| ||||||| |||  | |||||| | ||||| |||||||||||||||||| ||||||||||||||||||||||    
T  1519227 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttca 1519146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 385
Target Start/End: Complemental strand, 12121770 - 12121461
Alignment:
Q  76 aagagttccctcttgttattgttgaaacgataacgaggtggaacagttatctttctcaatgatggtcttgataatatcatcgagtcaacaatatttttat 175  Q
    ||||||||| |||  || ||||||||||||||||||  ||||   || | ||||||||||||||| ||||| |||||||  ||| ||| || ||    ||    
T  12121770 aagagttccatctccttgttgttgaaacgataacgatctggagttgtaaactttctcaatgatggccttgaaaatatcaatgaggcaagaacatcacaat 12121671  T
Q  176 gcactttatagcagttcttcaaattgatctccctcagtcgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaag 275  Q
    |||||| |   || |  ||||||| |||||| || ||| ||||||| |||||||||||||| ||||| ||  | |  |||||| || | ||   ||| ||    
T  12121670 gcacttgaagacaatatttcaaatcgatctctcttagttgtgtgcatttttctaccacatgcttcactcccatctctgtgacaaaaaagcaccattccag 12121571  T
Q  276 taacagttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaact 375  Q
    | | |||||||||||||| || |||| |||||| || |   |||||  ||| | ||||||   ||||||||||||||||||||| || ||||||||||||    
T  12121570 tgagagttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaact 12121471  T
Q  376 tcaaagttca 385  Q
    ||||||||||    
T  12121470 tcaaagttca 12121461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 385
Target Start/End: Complemental strand, 1489557 - 1489365
Alignment:
Q  193 ttcaaattgatctccctcagtcgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcc 292  Q
    |||||||||||||| || ||| ||| ||| ||||||| |||||| ||||| ||  | |  ||||||| | ||||   ||| ||||| |||||||||||||    
T  1489557 ttcaaattgatctctcttagttgtgcgcatttttctagcacatgcttcactcccttctctgtgacattaaaacacccttccagtaagagttgcaaaagcc 1489458  T
Q  293 cgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 385  Q
    | || |||| | |||| || | | | |||  |||||| | |||   ||||||||||||||||||||| || ||||||||||||||||||||||    
T  1489457 cacggcaacacattgagattacacacagtgtttcgttgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttca 1489365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 258 - 385
Target Start/End: Complemental strand, 1552898 - 1552771
Alignment:
Q  258 ataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaac 357  Q
    ||||| ||| ||||| |||||||| ||||||||||| |||||| ||||||| |||| || ||||  ||| | || ||    ||||| |||||| ||||||    
T  1552898 ataattacattgttctagtaacagctgcaaaagcccacgacaattctttgatatcacattgagtgtttcatcattaatatttgtatgtgacaaattcaac 1552799  T
Q  358 acctccagtttgggaacttcaaagttca 385  Q
    || ||||||||||||| |||||||||||    
T  1552798 acttccagtttgggaatttcaaagttca 1552771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 121 - 242
Target Start/End: Complemental strand, 55505373 - 55505252
Alignment:
Q  121 gttatctttctcaatgatggtcttgataatatcatcgagtcaacaatatttttatgcactttatagcagttcttcaaattgatctccctcagtcgtgtgc 220  Q
    |||||||||||||||||||| ||||| |||| ||| |||||||||| | |  ||||||||||||  ||    ||||| |||||||| || ||| ||||||    
T  55505373 gttatctttctcaatgatggccttgaaaataccattgagtcaacaacactagtatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgc 55505274  T
Q  221 agttttctaccacatgattcac 242  Q
    ||||||||| ||| || |||||    
T  55505273 agttttctaacacgtgtttcac 55505252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 166
Target Start/End: Complemental strand, 3438898 - 3438786
Alignment:
Q  54 gagaaggcatacatgacccaagaagagttccctcttgttattgttgaaacgataacgaggtggaacagttatctttctcaatgatggtcttgataatatc 153  Q
    |||||||||| || ||| || ||| ||||||||||| ||  |  ||||| |||||||||||||| |||||| |||||||||||||||  |||| |||| |    
T  3438898 gagaaggcatccacgacgcaggaaaagttccctctttttgctactgaaatgataacgaggtggagcagttacctttctcaatgatggctttgaaaatacc 3438799  T
Q  154 atcgagtcaacaa 166  Q
    |||  ||||||||    
T  3438798 atctcgtcaacaa 3438786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 385
Target Start/End: Original strand, 532238 - 532284
Alignment:
Q  339 tgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 385  Q
    |||||||||||||||||||||||| || ||||| |||||||||||||    
T  532238 tgtatatgacaagttcaacacctctagcttggggacttcaaagttca 532284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 384
Target Start/End: Original strand, 558486 - 558592
Alignment:
Q  278 acagttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttc 377  Q
    |||||| ||||||||| |||||||||||||| |||| || |||| |||| | |||||    |||  ||||||||||||||||| | || |||| ||||||    
T  558486 acagttccaaaagcccacgacaactctttgagatcacatggagtgcttcatcatcaatatatgttaatgacaagttcaacacccctaggttggcaacttc 558585  T
Q  378 aaagttc 384  Q
    |||||||    
T  558586 aaagttc 558592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 433
Target Start/End: Complemental strand, 55908902 - 55908684
Alignment:
Q  215 gtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttgaaatcag 314  Q
    ||||||||||||| || ||||| ||||| ||  | |  ||||| | || ||||| ||| || |||||||| |||||||| | |||| ||||||| ||||     
T  55908902 gtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgagatcat 55908803  T
Q  315 atagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactgcacgcagtttcacttttgagcagtga 414  Q
    |||||||  ||| | |||||| | ||||| ||||||||| |||||||| | ||  ||||||| |||||| | |  | | ||||||||| |||| ||||      
T  55908802 atagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaacagtag 55908703  T
Q  415 gctaagttcaaatgcctaa 433  Q
    ||||| |||||||| ||||    
T  55908702 gctaaattcaaatgtctaa 55908684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 659758 - 659799
Alignment:
Q  339 tgtatatgacaagttcaacacctccagtttgggaacttcaaa 380  Q
    ||||| |||||||||||||||||| |||||||||||||||||    
T  659758 tgtatgtgacaagttcaacacctctagtttgggaacttcaaa 659799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 385
Target Start/End: Original strand, 1545813 - 1545868
Alignment:
Q  330 atcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 385  Q
    |||||||| |||| |  |||||||||||||||||||||| ||||||| ||||||||    
T  1545813 atcaactcttgtaaacaacaagttcaacacctccagtttaggaactttaaagttca 1545868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 6006148 - 6006203
Alignment:
Q  111 aggtggaacagttatctttctcaatgatggtcttgataatatcatcgagtcaacaa 166  Q
    ||||||| |||||||||||||||||||||| ||||  |||| |||| |||||||||    
T  6006148 aggtggagcagttatctttctcaatgatggccttgtaaataccatcaagtcaacaa 6006203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 431
Target Start/End: Complemental strand, 12116634 - 12116533
Alignment:
Q  330 atcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactgcacgcagtttcacttttgagcagtgagctaagttcaaatgc 429  Q
    |||||| | ||||| |||||||||||||||||| |  || ||||| |||||||||| |  ||||||||| | |||||| ||||  ||||||||  |||||    
T  12116634 atcaacacttgtatgtgacaagttcaacacctctaaatttggaacatcaaagttcattctacgcagttttatttttgaacagtaggctaagttttaatgc 12116535  T
Q  430 ct 431  Q
    ||    
T  12116534 ct 12116533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 433
Target Start/End: Complemental strand, 53761817 - 53761728
Alignment:
Q  344 atgacaagttcaacacctccagtttgggaacttcaaagttcactgcacgcagtttcacttttgagcagtgagctaagttcaaatgcctaa 433  Q
    |||||||||||||| |||| || ||||||||| ||||||||| | ||   || |||||| |||| || |  |||||||||||||||||||    
T  53761817 atgacaagttcaacgcctctagcttgggaactacaaagttcattccaattagcttcactcttgaacactcggctaagttcaaatgcctaa 53761728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 433
Target Start/End: Original strand, 371027 - 371063
Alignment:
Q  397 ttcacttttgagcagtgagctaagttcaaatgcctaa 433  Q
    |||||| |||||||||| |||||||||||||||||||    
T  371027 ttcactcttgagcagtgggctaagttcaaatgcctaa 371063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 177 - 434
Target Start/End: Original strand, 21235445 - 21235702
Alignment:
Q  177 cactttatagcagttcttcaaattgatctccctcagtcgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagt 276  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21235445 cactttatagcagttcttcaaattgatctccctcagttgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgctcaagt 21235544  T
Q  277 aacagttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaactt 376  Q
    |||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21235545 aacagttgcaaaagcctgcgacagctctttgaaatcaaatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaactt 21235644  T
Q  377 caaagttcactgcacgcagtttcacttttgagcagtgagctaagttcaaatgcctaag 434  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  21235645 caaagttcactccacacagtttcacttttgagcagtgagctaagttcaaatgcctaag 21235702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 208 - 385
Target Start/End: Original strand, 27922426 - 27922603
Alignment:
Q  208 ctcagtcgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttg 307  Q
    |||||| | |||||||||||||||||||| ||||| ||  | || |||| || || ||||| ||||||| ||| || ||||||||| | |||||||||||    
T  27922426 ctcagttgagtgcagttttctaccacatggttcactcccttctttgtgaaatcattacaattttcaagtgacaatttcaaaagcccacaacaactctttg 27922525  T
Q  308 aaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 385  Q
    | |||| ||| ||| |||| | ||||||   |||||||||||||||||||||||||| ||||||||||||||||||||    
T  27922526 agatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttca 27922603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 209 - 385
Target Start/End: Complemental strand, 18315453 - 18315277
Alignment:
Q  209 tcagtcgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttga 308  Q
    ||||| |||||||||||||||||||||  ||  | ||| | |  ||||||| | ||||  |||| | |||||||||||||||||  ||||||||||||||    
T  18315453 tcagttgtgtgcagttttctaccacatacttttctcctttctctgtgacatcacaacagcgttccaataacagttgcaaaagcctacgacaactctttga 18315354  T
Q  309 aatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 385  Q
     |||| ||||||| |||| | |||||||  ||||| |||||||||||||||||||||||||||||||| ||||||||    
T  18315353 gatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttca 18315277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 122 - 381
Target Start/End: Complemental strand, 34936430 - 34936171
Alignment:
Q  122 ttatctttctcaatgatggtcttgataatatcatcgagtcaacaatatttttatgcactttatagcagttcttcaaattgatctccctcagtcgtgtgca 221  Q
    |||||||||||||  |||| |||||   ||||||||||  ||||| |||   || |||||||| ||||||| |||||||||||||||||| | |||||||    
T  34936430 ttatctttctcaacaatggccttgaagttatcatcgaggtaacaacattagcatccactttatggcagttcctcaaattgatctccctcaattgtgtgca 34936331  T
Q  222 gttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttgaaatcagatagagt 321  Q
     ||||| |||||| | |  || ||  | |  ||||||| | |||||| || |||||| |||||||||||||| |||||||||||||  ||   |||||||    
T  34936330 attttcaaccacacgctcaactcccttctccgtgacatcacaacaattttgaagtaatagttgcaaaagcccacgacaactctttgcgatggcatagagt 34936231  T
Q  322 tcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaag 381  Q
      ||  | |||||||| |||||||||||||| ||||||||| ||||| ||||| ||||||    
T  34936230 gttttatcatcaactcttgtatatgacaagtccaacacctctagttttggaacatcaaag 34936171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 57 - 401
Target Start/End: Original strand, 32151068 - 32151412
Alignment:
Q  57 aaggcatacatgacccaagaagagttccctcttgttattgttgaaacgataacgaggtggaacagttatctttctcaatgatggtcttgataatatcatc 156  Q
    ||||||| |||||| ||||||||||| ||| || || |   |||||  ||||||||||||| |||||||||||||||||||||| ||||| |||| |||     
T  32151068 aaggcatccatgacgcaagaagagtttcctttttttgtcactgaaatcataacgaggtggagcagttatctttctcaatgatggccttgaaaataccatt 32151167  T
Q  157 gagtcaacaatatttttatgcactttatagcagttcttcaaattgatctccctcagtcgtgtgcagttttctaccacatgattcacgcctcttttagtga 256  Q
       ||||||||||    |||||||| ||  ||   | | |||||||||||||||||| || | |||||||    |||||| ||||| ||  | |  ||||    
T  32151168 ttatcaacaatatcagcatgcacttgatcacaaccccttaaattgatctccctcagttgtatacagtttttcctcacatgcttcacccccttctctgtga 32151267  T
Q  257 cataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaa 356  Q
    |||| | ||||    | | |||||||||||||||||| | |||||||||||| |||| |||||||  ||| | |||||  | |||| |||||||||| ||    
T  32151268 catatttacaagacaccaataacagttgcaaaagcccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaa 32151367  T
Q  357 cacctccagtttgggaacttcaaagttcactgcacgcagtttcac 401  Q
    ||||||||| |||| |||||| ||||||| | ||||||| |||||    
T  32151368 cacctccagattggaaacttcgaagttcattccacgcagcttcac 32151412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 187 - 385
Target Start/End: Complemental strand, 28246495 - 28246299
Alignment:
Q  187 cagttcttcaaattgatctccctcagtcgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgca 286  Q
    |||| ||||||||||| ||| |||||| ||||||| ||||| ||||||||  |||| | | | |  ||||||   | ||||  || |||| |||||||||    
T  28246495 cagtacttcaaattgacctctctcagttgtgtgcatttttcaaccacatgcgtcactcatttgtctgtgacaccttcacaaaatttaagtgacagttgca 28246396  T
Q  287 aaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 385  Q
    ||||||||| |||||||||||| |||  |||||||  ||  ||  |||||| |||| ||||||||| ||||||||||||||||||||||||||||||||    
T  28246395 aaagcccgctacaactctttgagatccaatagagtgatttatt--caactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 28246299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 215 - 385
Target Start/End: Complemental strand, 17636574 - 17636405
Alignment:
Q  215 gtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttgaaatcag 314  Q
    ||||||| ||||||| ||||||  |||| ||| || | ||||||| |  ||||| ||||||| ||| ||||||||| |   ||||||||||||| ||||     
T  17636574 gtgtgcaattttctagcacatgcctcactcct-ttctcgtgacattaacacaatattcaagtgacaattgcaaaagtctaagacaactctttgagatcac 17636476  T
Q  315 atagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 385  Q
    ||| | | |||| |  ||||||||||| | |||||||||||||||||||| ||||||||||||||||||||    
T  17636475 atacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaacttcaaagttca 17636405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 298 - 406
Target Start/End: Original strand, 12102274 - 12102382
Alignment:
Q  298 caactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactgcacgcagtt 397  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| | || ||||||    
T  12102274 caactctttgaaatcagatagagttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttgggaacttcaaagttcaatccatgcagtt 12102373  T
Q  398 tcacttttg 406  Q
    |||||||||    
T  12102374 tcacttttg 12102382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 12102160 - 12102254
Alignment:
Q  144 tgataatatcatcgagtcaacaatatttttatgcactttatagcagttcttcaaattgatctccctcagtcgtgtgcagttttctaccacatgat 238  Q
    ||||||||||||||||||||||| ||| | | ||||||||||||||||||||| |||| |||| |||||| ||||||||||||||||||||||||    
T  12102160 tgataatatcatcgagtcaacaacattatgaagcactttatagcagttcttcagattgctctctctcagttgtgtgcagttttctaccacatgat 12102254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 215 - 428
Target Start/End: Original strand, 7119082 - 7119295
Alignment:
Q  215 gtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttgaaatcag 314  Q
    |||||||||||||| ||||||| |||||  || |||| |||||||||||||||| ||  ||||| |||| ||||||||||| |||| |||| || ||||     
T  7119082 gtgtgcagttttcttccacatgtttcacttctttttttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcac 7119181  T
Q  315 atagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactgcacgcagtttcacttttgagcagtga 414  Q
    || ||||  ||| | ||||||    |||| ||||||||||||||||||||| | | ||||  ||||||||| | || | || |||||| |||| |||||     
T  7119182 atggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggtgaacaacaaagttcattccaagtagcttcactcttgaacagtgg 7119281  T
Q  415 gctaagttcaaatg 428  Q
    ||||||||||||||    
T  7119282 gctaagttcaaatg 7119295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 273 - 433
Target Start/End: Complemental strand, 11936391 - 11936231
Alignment:
Q  273 aagtaacagttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttggga 372  Q
    |||| |||||||||||||||| | |||||||||||| |||  |||||||  ||  |  ||||||| |||| ||||||||| |||||||||||||||||||    
T  11936391 aagtgacagttgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttggga 11936292  T
Q  373 acttcaaagttcactgcacgcagtttcacttttgagcagtgagctaagttcaaatgcctaa 433  Q
    ||||||||||||| || ||| || |||| | |||| ||| ||| ||| |||||||| ||||    
T  11936291 acttcaaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaa 11936231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 273 - 433
Target Start/End: Complemental strand, 11948371 - 11948211
Alignment:
Q  273 aagtaacagttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttggga 372  Q
    |||| |||||||||||||||| | |||||||||||| |||  |||||||  ||  |  ||||||| |||| ||||||||| |||||||||||||||||||    
T  11948371 aagtgacagttgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttggga 11948272  T
Q  373 acttcaaagttcactgcacgcagtttcacttttgagcagtgagctaagttcaaatgcctaa 433  Q
    ||||||||||||| || ||| || |||| | |||| ||| ||| ||| |||||||| ||||    
T  11948271 acttcaaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaa 11948211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 195 - 428
Target Start/End: Original strand, 6394769 - 6395002
Alignment:
Q  195 caaattgatctccctcagtcgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccg 294  Q
    |||||| ||||| |||| | |||||||||||||||||||||| | ||| ||  |||  |||||||  | |||||  ||||||   | ||||||||||||     
T  6394769 caaattaatctctctcaattgtgtgcagttttctaccacatgttccacacccttttctgtgacatttttacaattatcaagttgtaattgcaaaagccca 6394868  T
Q  295 cgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactgcacgca 394  Q
    | |||| ||||||| |||| | | ||   ||| | |||||| | ||||| ||||||||||||||||||||| | ||||||| ||||||||| | || | |    
T  6394869 caacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgta 6394968  T
Q  395 gtttcacttttgagcagtgagctaagttcaaatg 428  Q
    ||||||||||||| |||  |||||||||||||||    
T  6394969 gtttcacttttgaacagaaagctaagttcaaatg 6395002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 202 - 403
Target Start/End: Original strand, 6423129 - 6423330
Alignment:
Q  202 atctccctcagtcgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaac 301  Q
    ||||| |||| | |||||||||||  ||||||| | ||||  ||| | || || ||||||| ||||| ||||||||| |||||||||| ||| | |||||    
T  6423129 atctctctcaattgtgtgcagtttaataccacacgtttcagtcctttgtttgttacataatcacaatcttcaagtaatagttgcaaaatcccacaacaac 6423228  T
Q  302 tctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactgcacgcagtttcac 401  Q
    ||||||| |||  |||||||  ||  |    ||||| ||||| ||||||||||||||||||||| |||||||||| |||||||| |||||| || |||||    
T  6423229 tctttgagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacctccagcttgggaacttaaaagttcattgcacgtagcttcac 6423328  T
Q  402 tt 403  Q
    ||    
T  6423329 tt 6423330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 215 - 428
Target Start/End: Original strand, 7131560 - 7131773
Alignment:
Q  215 gtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttgaaatcag 314  Q
    |||||||||||||| ||||||| |||||  || | || |||||||||||||||| ||  ||||| |||| ||||||||||| |||| |||| || ||||     
T  7131560 gtgtgcagttttcttccacatgtttcactgctttgtttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcac 7131659  T
Q  315 atagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactgcacgcagtttcacttttgagcagtga 414  Q
    || ||||  ||| | ||||||    |||| ||||||||||||||||||||| | | ||||  ||||||||| | || | || |||||| |||| |||||     
T  7131660 atggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggcgaacaacaaagttcattccaagtagcttcactcttgaacagtgg 7131759  T
Q  415 gctaagttcaaatg 428  Q
    ||||||||||||||    
T  7131760 gctaagttcaaatg 7131773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 215 - 382
Target Start/End: Original strand, 6415891 - 6416058
Alignment:
Q  215 gtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttgaaatcag 314  Q
    |||||||||| ||||||||||| ||||| ||   ||  ||||||| || ||||  ||||||||| |||||||||||||||| |||| ||||||| ||||     
T  6415891 gtgtgcagttctctaccacatgtttcactcccacttctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatcac 6415990  T
Q  315 atagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagt 382  Q
    ||||||   ||  | || |||   ||||| ||||||||||||||||||||| ||||||||| ||||||    
T  6415991 atagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagt 6416058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 274 - 385
Target Start/End: Original strand, 9411339 - 9411450
Alignment:
Q  274 agtaacagttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaa 373  Q
    ||||||||||||||||| || |||||| ||||||| |||  |||||||  ||| |    ||| ||||||||||||||||||||||||||||| |||||||    
T  9411339 agtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaa 9411438  T
Q  374 cttcaaagttca 385  Q
    | ||||||||||    
T  9411439 cctcaaagttca 9411450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 208 - 385
Target Start/End: Complemental strand, 6603383 - 6603206
Alignment:
Q  208 ctcagtcgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttg 307  Q
    |||||| || ||||||||||||||||||| ||||| ||| | |  |||||||||||||||| ||  | ||| |||| |||||||||  ||||||||||||    
T  6603383 ctcagttgtttgcagttttctaccacatgtttcactcctttctctgtgacataataacaatatttcaataatagttccaaaagcccaggacaactctttg 6603284  T
Q  308 aaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 385  Q
    | |||  ||||| |  ||| | |||||| ||||||| || ||||| ||||||||  || ||||||| | |||||||||    
T  6603283 agatcgcatagactgtttcatcatcaacacctgtatctgccaagtccaacacctgtagcttgggaagtacaaagttca 6603206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 385
Target Start/End: Original strand, 6432151 - 6432256
Alignment:
Q  280 agttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaa 379  Q
    ||||||| |||||| | |||| ||||| | |||| ||| |||  ||| | |||||| | ||||| ||||||||||||||||| ||| |||||||||||||    
T  6432151 agttgcagaagcccacaacaattctttaagatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaa 6432250  T
Q  380 agttca 385  Q
    ||||||    
T  6432251 agttca 6432256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 385
Target Start/End: Original strand, 28935055 - 28935144
Alignment:
Q  296 gacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 385  Q
    |||||||||||||||||| |  |||| |||| |  ||||||| ||||| |||||||||||||||||| |||| |||||| ||||| ||||    
T  28935055 gacaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttca 28935144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 433
Target Start/End: Original strand, 6402772 - 6403003
Alignment:
Q  202 atctccctcagtcgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgt-tcaagtaacagttgcaaaagcccgcgacaa 300  Q
    ||||| |||||| |||| |||||||||| |||||| ||| | ||  |||  ||||||| |||||||| | |||| ||| |||| ||||||||| | ||||    
T  6402772 atctctctcagttgtgtacagttttctatcacatgtttcgctcccttttctgtgacattataacaatctctcaa-taatagtttcaaaagcccactacaa 6402870  T
Q  301 ctctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactgcacgcagtttca 400  Q
     ||||||| |||| |||||||  ||| | ||||||    |||| ||||||||||||||| || |||| ||||||| ||||||| | | || | || ||||    
T  6402871 ttctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagtttattccaagtagcttca 6402970  T
Q  401 cttttgagcagtgagctaagttcaaatgcctaa 433  Q
    || |||| ||   || |||||||||||||||||    
T  6402971 ctcttgaacacccagttaagttcaaatgcctaa 6403003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 385
Target Start/End: Complemental strand, 7994354 - 7994186
Alignment:
Q  217 gtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttgaaatcagat 316  Q
    |||||||||||||||||||| ||||| ||    |  || |||| || |||| |||||||||| ||||||||||| ||   |||| ||||||| |||| ||    
T  7994354 gtgcagttttctaccacatgtttcactccctcctcggtaacatcattacaaagttcaagtaatagttgcaaaagtccagaacaattctttgagatcacat 7994255  T
Q  317 agagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 385  Q
    | |||  ||||| || ||| | ||||| ||||| |||||||||||| || || |||||| |||||||||    
T  7994254 atagtgtttcgtcattaacccttgtatttgacatgttcaacacctctagcttcggaactacaaagttca 7994186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 12102116 - 12102160
Alignment:
Q  78 gagttccctcttgttattgttgaaacgataacgaggtggaacagt 122  Q
    |||||||||||| || |||||||||||||||||||||||||||||    
T  12102116 gagttccctctttttgttgttgaaacgataacgaggtggaacagt 12102160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 383
Target Start/End: Original strand, 14820598 - 14820786
Alignment:
Q  195 caaattgatctccctcagtcgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccg 294  Q
    |||||| ||||| |||||  |||||||||||| ||||||||| ||||| ||  | |  ||||||| || ||| | ||||||||| | | ||||||||||     
T  14820598 caaattaatctctctcagctgtgtgcagttttttaccacatgtttcacacccttctctgtgacatcattacatttttcaagtaataatcgcaaaagccca 14820697  T
Q  295 cgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagtt 383  Q
    | |||| |||| || |||| ||| |||  ||| ||||||||   ||||| ||| |||||||||||||| |  ||||||||| |||||||    
T  14820698 caacaattcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgggaactgcaaagtt 14820786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 428
Target Start/End: Original strand, 6426566 - 6426649
Alignment:
Q  345 tgacaagttcaacacctccagtttgggaacttcaaagttcactgcacgcagtttcacttttgagcagtgagctaagttcaaatg 428  Q
    |||||| |||||||||||||| | ||||||| ||||||||| | || | |||||||| ||||| |||  |||||||||||||||    
T  6426566 tgacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacgtttgaacagaaagctaagttcaaatg 6426649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 434
Target Start/End: Original strand, 6409996 - 6410150
Alignment:
Q  280 agttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaa 379  Q
    |||||||||||||  | |||| ||||||| |||| ||| ||   ||| | |||||| | ||||| |||| |||||||||||| ||| |||||||||||||    
T  6409996 agttgcaaaagccgacaacaattctttgagatcacataaagagtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaa 6410095  T
Q  380 agttcactgcacgcagtttcacttttgagcagtgagctaagttcaaatgcctaag 434  Q
    |||||| | || | || |||||||||  ||| |  ||||||| ||||||| ||||    
T  6410096 agttcattccatgtagcttcacttttttgcaataggctaagtccaaatgcttaag 6410150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 385
Target Start/End: Complemental strand, 6589501 - 6589327
Alignment:
Q  211 agtcgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttgaaa 310  Q
    |||||||||||||||||||||||||| ||||| ||    |  |||||||||| |||| ||| |||| | | ||||| ||||||   |||| | ||||| |    
T  6589501 agtcgtgtgcagttttctaccacatgtttcactccctcctccgtgacataattacaaagttgaagtgataattgcataagccctatacaattttttgaga 6589402  T
Q  311 tcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 385  Q
    ||||||| |||  ||  | || |||   ||||| |||||||||||||||||||||  |||||||| |||||||||    
T  6589401 tcagatatagtgttttatcattaacatttgtatttgacaagttcaacacctccagcatgggaactacaaagttca 6589327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 383
Target Start/End: Original strand, 14802343 - 14802429
Alignment:
Q  297 acaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagtt 383  Q
    |||| |||||||||||| |||||||  ||| | ||||||   ||||| |||||| |||||||| ||||  |||||||||||||||||    
T  14802343 acaattctttgaaatcacatagagtgtttcatcatcaacctttgtatttgacaaattcaacacttccatcttgggaacttcaaagtt 14802429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 375
Target Start/End: Complemental strand, 6594657 - 6594620
Alignment:
Q  338 ctgtatatgacaagttcaacacctccagtttgggaact 375  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  6594657 ctgtatttgacaagtacaacacctccagtttgggaact 6594620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 383
Target Start/End: Original strand, 14818307 - 14818475
Alignment:
Q  215 gtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttgaaatcag 314  Q
    |||||||||||||||| ||||| ||||| ||  | |  ||||||| || ||||| ||||||||| | | ||||||||||   |||| |||| || ||||     
T  14818307 gtgtgcagttttctactacatgtttcacacccttctctgtgacattattacaattttcaagtaataatcgcaaaagcccagaacaattcttggagatcat 14818406  T
Q  315 atagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagtt 383  Q
    ||| |||  ||| ||||||||   ||||| ||| |||||||||||||| |  ||| ||||| |||||||    
T  14818407 ataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgagaactgcaaagtt 14818475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 111 - 433
Target Start/End: Complemental strand, 51114059 - 51113737
Alignment:
Q  111 aggtggaacagttatctttctcaatgatggtcttgataatatcatcgagtcaacaatatttttatgcactttatagcagttcttcaaattgatctccctc 210  Q
    ||||||| | ||||| | |||||||||||| ||||| |||||||| ||| |||||| |||   |||||||||| | ||   ||| ||||| ||||| ||     
T  51114059 aggtggagctgttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctctt 51113960  T
Q  211 agtcgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttgaaa 310  Q
    |||  |||||| |||||||||||||| ||||| ||  | |  |||||||  ||||||| ||  |||||||||||||||||||| | ||||||||| || |    
T  51113959 agttttgtgcatttttctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaactcttcgaga 51113860  T
Q  311 tcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactgcacgcagtttcacttttgagca 410  Q
    ||| |||||||  ||| | ||||||   ||||| ||||||||  |||||||||||||||||| |||||||||||| | || | || |||| |||||| ||    
T  51113859 tcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattccaagtagcttcagttttgaaca 51113760  T
Q  411 gtgagctaagttcaaatgcctaa 433  Q
    || |||||| |||||||||||||    
T  51113759 gtaagctaatttcaaatgcctaa 51113737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 178 - 407
Target Start/End: Complemental strand, 51121104 - 51120875
Alignment:
Q  178 actttatagcagttcttcaaattgatctccctcagtcgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagta 277  Q
    ||||||||||| | | |||| |||||| | |||| | |||||||||||||||||||||| ||||| ||| |||  ||||||||  ||||   ||| ||      
T  51121104 actttatagcaatacctcaagttgatcactctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagag 51121005  T
Q  278 acagttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttc 377  Q
    ||| |||||||||||| |||||||||||||| || | ||| |||| ||| | |||||||| |||||  ||||||||||||||||||| |||| |||||||    
T  51121004 acaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttc 51120905  T
Q  378 aaagttcactgcacgcagtttcacttttga 407  Q
    |||||||| | || ||||||||||| ||||    
T  51120904 aaagttcattccatgcagtttcactcttga 51120875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 215 - 433
Target Start/End: Complemental strand, 13470906 - 13470688
Alignment:
Q  215 gtgtgcagttttctaccacatgattcacgcc-tcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttgaaatca 313  Q
    |||||||||| ||||||||||| ||||| || |||| | ||||||| || |||| |||||||||| |||||||||||||| | |||| ||||||| ||||    
T  13470906 gtgtgcagttctctaccacatgtttcactccctcttct-gtgacattatgacaaagttcaagtaatagttgcaaaagcccacaacaattctttgagatca 13470808  T
Q  314 gatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactgcacgcagtttcacttttgagcagtg 413  Q
     |||||||  ||  | || |||   ||||| ||||||||||||||||||||| ||||||||  ||||||||| | || | || |||||||||   || |     
T  13470807 tatagagtgttttatcattaacctttgtatttgacaagttcaacacctccagattgggaacaacaaagttcattccaagtagcttcacttttttacaata 13470708  T
Q  414 agctaagttcaaatgcctaa 433  Q
     |||||||||||||||||||    
T  13470707 ggctaagttcaaatgcctaa 13470688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 273 - 385
Target Start/End: Original strand, 1657234 - 1657346
Alignment:
Q  273 aagtaacagttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttggga 372  Q
    |||| ||||||||||||||||||  ||||||||||| |||  |||||||  |   || ||||||| |||| ||||||||| |||||||||||||||||||    
T  1657234 aagtgacagttgcaaaagcccgctgcaactctttgagatccaatagagtgatatattgtcaactcttgtaaatgacaagtccaacacctccagtttggga 1657333  T
Q  373 acttcaaagttca 385  Q
    |||||||||||||    
T  1657334 acttcaaagttca 1657346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 385
Target Start/End: Complemental strand, 51764614 - 51764444
Alignment:
Q  215 gtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttgaaatcag 314  Q
    ||||||||||||| |||||||| ||||| ||  | |   |||||| || ||||||||| ||||| |||||||||||||||| |||| ||||||| |||      
T  51764614 gtgtgcagttttcaaccacatgtttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattctttgagatcgc 51764515  T
Q  315 atagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 385  Q
    |||||||  ||  | |||||||  |||| |||||||||  ||||||||||| || |||||| |||||||||    
T  51764514 atagagtgttttatcatcaacttttgtaaatgacaagtctaacacctccagcttcggaactgcaaagttca 51764444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 242
Target Start/End: Complemental strand, 514994 - 514875
Alignment:
Q  123 tatctttctcaatgatggtcttgataatatcatcgagtcaacaatatttttatgcactttatagcagt-tcttcaaattgatctccctcagtcgtgtgca 221  Q
    |||||||||||||||||| ||||| |||| ||| | | |||||| ||| | |||||||||||  ||   |||| ||||||||||| ||||||||||||||    
T  514994 tatctttctcaatgatggccttgaaaataccattggggcaacaacattataatgcactttattacaacctctt-aaattgatctctctcagtcgtgtgca 514896  T
Q  222 gttttctaccacatgattcac 242  Q
    |||||  |||||||| |||||    
T  514895 gtttttcaccacatgcttcac 514875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 383
Target Start/End: Complemental strand, 33714899 - 33714861
Alignment:
Q  345 tgacaagttcaacacctccagtttgggaacttcaaagtt 383  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  33714899 tgacaagttcagcacctccagtttggaaacttcaaagtt 33714861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 433
Target Start/End: Complemental strand, 514720 - 514684
Alignment:
Q  397 ttcacttttgagcagtgagctaagttcaaatgcctaa 433  Q
    |||||| |||||||||| |||||||||||||||||||    
T  514720 ttcactcttgagcagtgggctaagttcaaatgcctaa 514684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 220 - 382
Target Start/End: Complemental strand, 41901704 - 41901542
Alignment:
Q  220 cagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttgaaatcagataga 319  Q
    ||||||||||||||||| ||||| ||  | || ||||||| || ||||| || |||| ||| || |||||| || | |||||||||||| |||| ||| |    
T  41901704 cagttttctaccacatgcttcactcccttctttgtgacatcattacaatcttgaagtgacaatttcaaaagtccacaacaactctttgagatcatataaa 41901605  T
Q  320 gttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagt 382  Q
    || |||| | |||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  41901604 gtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 226 - 385
Target Start/End: Complemental strand, 41889717 - 41889558
Alignment:
Q  226 tctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttgaaatcagatagagttctt 325  Q
    ||||||||||||||||| ||  | || ||||||| |||||||| || |||||||| || | ||||||||| |||||||||||| |||  ||| |||  ||    
T  41889717 tctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgagatcttataaagtgttt 41889618  T
Q  326 cgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 385  Q
    | | |||||||  ||||||||| |||||||||||||||| ||||||||||| ||||||||    
T  41889617 catcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttca 41889558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 217 - 385
Target Start/End: Original strand, 32267402 - 32267570
Alignment:
Q  217 gtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttgaaatcagat 316  Q
    |||||||||||||| ||||| ||||| ||  | || |||| || || ||||| || |||| ||| || ||||||||| | |||||||||||| |||| ||    
T  32267402 gtgcagttttctactacatgcttcactcccttctttgtgatatcattacaatttttaagtgacaatttcaaaagcccacaacaactctttgagatcatat 32267501  T
Q  317 agagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 385  Q
    | ||| |||| | |||||||  ||| | |||||||||||| ||||||| ||||||||||||||||||||    
T  32267502 aaagtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttca 32267570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 382
Target Start/End: Original strand, 37937877 - 37937979
Alignment:
Q  280 agttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaa 379  Q
    |||||||||||||| |||||  ||||||| || | |||||||  ||  | ||||| || ||||| || ||||| ||||||||| || |||||||||||||    
T  37937877 agttgcaaaagcccacgacacatctttgagattacatagagtgtttgatcatcaattcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaa 37937976  T
Q  380 agt 382  Q
    |||    
T  37937977 agt 37937979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 383
Target Start/End: Complemental strand, 38267615 - 38267562
Alignment:
Q  330 atcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagtt 383  Q
    |||||||| ||||| || ||||| ||||||||| || |||||||||||||||||    
T  38267615 atcaactcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaaagtt 38267562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 114 - 383
Target Start/End: Complemental strand, 45245360 - 45245091
Alignment:
Q  114 tggaacagttatctttctcaatgatggtcttgataatatcatcgagtcaacaatatttttatgcactttatagcagttcttcaaattgatctccctcagt 213  Q
    ||||||| |||||||| |||| ||||| ||||| |||| ||||||| ||| || |||   |||||||| | |||||| | |||||||||||||  | |||    
T  45245360 tggaacatttatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagt 45245261  T
Q  214 cgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttgaaatca 313  Q
     ||||||| |||||||||||||| ||||| ||  | |  ||||||| |||||| | ||  | ||| |||||||||||||| |||||||||||||| ||||    
T  45245260 tgtgtgcaattttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatca 45245161  T
Q  314 gatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagtt 383  Q
     || ||||  ||| | ||||||   ||| | |||||| ||||||||||| ||||| ||||||||||||||    
T  45245160 catggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaagtt 45245091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 121 - 313
Target Start/End: Complemental strand, 44575763 - 44575571
Alignment:
Q  121 gttatctttctcaatgatggtcttgataatatcatcgagtcaacaatatttttatgcactttatagcagttcttcaaattgatctccctcagtcgtgtgc 220  Q
    |||| ||||||||||||||| ||||| | ||||| |||| ||| || ||    |||||| ||||  || ||  ||||||||| ||| ||| || ||||||    
T  44575763 gttaactttctcaatgatggccttgaaagtatcaacgaggcaagaacatcacgatgcacattatcacaatttctcaaattgagctctctcggttgtgtgc 44575664  T
Q  221 agttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttgaaatca 313  Q
    ||||||||||||||||||||| |||| | |  || ||||||| ||||||| ||||   |||||||||||||    ||||||||||||| ||||    
T  44575663 agttttctaccacatgattcaagcctttatcggtaacataatgacaatgtgcaagatccagttgcaaaagcttaggacaactctttgagatca 44575571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 275 - 385
Target Start/End: Complemental strand, 32785886 - 32785776
Alignment:
Q  275 gtaacagttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaac 374  Q
    ||||||||| |||||||||  || ||||  |||| |||| ||| ||| |||| | ||||| || ||||| |||||||||||||||||| ||||||||| |    
T  32785886 gtaacagtttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagc 32785787  T
Q  375 ttcaaagttca 385  Q
    || ||||||||    
T  32785786 tttaaagttca 32785776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 383
Target Start/End: Complemental strand, 1037838 - 1037670
Alignment:
Q  215 gtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttgaaatcag 314  Q
    ||||||||||||| || ||||| ||||| ||  | |  ||||| | || ||||| ||| || |||||||| |||||||| | |||| ||||||| ||||     
T  1037838 gtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgagatcat 1037739  T
Q  315 atagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagtt 383  Q
    |||||||  ||| | |||||| | ||||| ||||||||| |||||||| | ||  ||||||| ||||||    
T  1037738 atagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtt 1037670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 433
Target Start/End: Complemental strand, 19468549 - 19468455
Alignment:
Q  339 tgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactgcacgcagtttcacttttgagcagtgagctaagttcaaatgcctaa 433  Q
    ||||| |||||| |||||||||||||| ||||||||| ||||||||||| || | || |||||| |||| ||||| |||||||| ||||||||||    
T  19468549 tgtatctgacaacttcaacacctccagcttgggaactacaaagttcactccaagtagattcactcttgaacagtgggctaagtttaaatgcctaa 19468455  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 123 - 356
Target Start/End: Original strand, 7554321 - 7554554
Alignment:
Q  123 tatctttctcaatgatggtcttgataatatcatcgagtcaacaatatttttatgcactttatagcagttcttcaaattgatctccctcagtcgtgtgcag 222  Q
    |||| ||||||||||||| ||||| | || ||||  ||||||||||||   || |||||||   || |||| |||||| |||||  | ||| | ||||||    
T  7554321 tatccttctcaatgatggccttgaaactaccatctcgtcaacaatattgccattcactttaccacaattctgcaaattaatctctttgagtagcgtgcag 7554420  T
Q  223 ttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttgaaatcagatagagtt 322  Q
    |||||||||||||| ||||| ||  |||  ||||||| || |||   ||  ||||||||||| ||||| || | |||||||||||| |||| |||||||     
T  7554421 ttttctaccacatgcttcactcccttttctgtgacattatcacatcctttcagtaacagttgtaaaagtccaccacaactctttgagatcatatagagtg 7554520  T
Q  323 cttcgttatcaactcctgtatatgacaagttcaa 356  Q
    |||| | |||||| | ||||||||| ||||||||    
T  7554521 cttcatcatcaacacttgtatatgataagttcaa 7554554  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 380
Target Start/End: Original strand, 9586687 - 9586729
Alignment:
Q  338 ctgtatatgacaagttcaacacctccagtttgggaacttcaaa 380  Q
    ||||||||||||||||||||||||| || ||||| ||||||||    
T  9586687 ctgtatatgacaagttcaacacctctagcttggggacttcaaa 9586729  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 385
Target Start/End: Original strand, 52082636 - 52082676
Alignment:
Q  345 tgacaagttcaacacctccagtttgggaacttcaaagttca 385  Q
    |||||||||||||||||||| ||||| ||||| ||||||||    
T  52082636 tgacaagttcaacacctccaatttggaaacttgaaagttca 52082676  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 195 - 385
Target Start/End: Complemental strand, 15092345 - 15092155
Alignment:
Q  195 caaattgatctccctcagtcgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccg 294  Q
    |||||| ||||| |||| | ||||||||||||||| |||||| ||||| ||   ||  ||||||| |||||||  ||||||||| ||||||||||||||     
T  15092345 caaattaatctctctcaattgtgtgcagttttctagcacatgtttcactcccacttctgtgacattataacaaaattcaagtaatagttgcaaaagccca 15092246  T
Q  295 cgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 385  Q
    | |||| ||||||| |||  |||||||  ||  | || |||   ||| | |||||| |||||||||||||| | ||||||| |||||||||    
T  15092245 caacaattctttgagatcgcatagagtgttttatcattaacctttgtttctgacaaattcaacacctccagctcgggaactgcaaagttca 15092155  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 433
Target Start/End: Original strand, 10614521 - 10614736
Alignment:
Q  218 tgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgttcaagtaacagttgcaaaagcccgcgacaactctttgaaatcagata 317  Q
    ||||||||||||||||||| ||||| |||  ||  ||||||| || | || |||||||||| |||||||||||||| | |||  |||| || |||| |||    
T  10614521 tgcagttttctaccacatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagttcttcgagatcacata 10614620  T
Q  318 gagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactgcacgcagtttcacttttgagcagtgagct 417  Q
    ||||  ||  | || |||    |||| ||||||||||||||||||||| ||||||||  ||| ||||| | || | || |||||||||   || |  |||    
T  10614621 gagtgttttatcattaaccttcgtatttgacaagttcaacacctccagattgggaacaacaacgttcattccaagtagcttcacttttttacaataggct 10614720  T
Q  418 aagttcaaatgcctaa 433  Q
    ||||||||||||||||    
T  10614721 aagttcaaatgcctaa 10614736  T

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