View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11591_high_3 (Length: 411)
Name: NF11591_high_3
Description: NF11591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11591_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 8330402 - 8330792
Alignment:
| Q |
1 |
aatgactctatgcatcagtggccaatgaaaaatgaccaaagtcactactaagtagacatccattttctttgtagattttcactataggccaatgacaccc |
100 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8330402 |
aatgattctatgcatcagtgaccaatgaaaaatgaccaaagtcactactaagtagacatccattttctttgtagattttcactataggccaatgacaccc |
8330501 |
T |
|
| Q |
101 |
aaatgttataaatatataactggtacactattatcttgagattgaacgatataaaataactttgtacaaatatgttttgccttgcatttgatcaacttac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8330502 |
aaatgttataaatatataactggtacactattatcttgagattgaacgatataaaataactttgtacaaatatgttttgccttgcatttgatcaacttac |
8330601 |
T |
|
| Q |
201 |
acaagattattcaaagcacaacatataattaagtattaatactagaaaccagagtaacttctagttgtaacatcatgcaactcatacaaatcttatatac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8330602 |
acaagattattcaaagcacaacatataattaagtattaatactagaaaccagagtaacttctagttgt-acatcatgcaactcatacaaatcttatatac |
8330700 |
T |
|
| Q |
301 |
aagtcctgcctgtgtcctgacactgagacaaccataaatccatatgctctatgatcttttgtctaactttgtgaacagcatcaggggatgtg |
392 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8330701 |
aagtcctgcccgtgtcctgacactgagacaaccataaatccatatgctctatgatcttttgtctaactttgtgaacagcatcaggggatgtg |
8330792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University