View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11591_high_5 (Length: 330)
Name: NF11591_high_5
Description: NF11591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11591_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 41763251 - 41762928
Alignment:
| Q |
1 |
tcatgggccaagacaaggctttgggcccatttgaacgatttgatatatataccccaccaataaaataaactttgttgtatatataccccctatgagaaaa |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||| |
|
|
| T |
41763251 |
tcatgggccaagacaaggatttgggcccatttgtacgatttgatatatataccccaccaataaaataaact--gttgtatatataccccctataaaaaaa |
41763154 |
T |
|
| Q |
101 |
ttacggacctaagccttcggccgtcacactccccacctatgcgtagggtcagccctgcattttgctccccaaatttgagttttcttcggaggggagagaa |
200 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41763153 |
ttatggacctaagccttcggccgtcgcactccccacctatgcgtagggtcagccctgcattttgctccccaaatttgagttttcttcggaggggaaagaa |
41763054 |
T |
|
| Q |
201 |
tgtacgttgtttacatttttattatatttccaacattataatcaattatattttagaatttcaaagttgtccttactaaattgttgttacccgtcttgac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||| |||||||| |
|
|
| T |
41763053 |
tgtacgttgtttacatttttattatatttccaaaattataatcaattttattttagaatttcaaagttgtccttactgaatttttgttacctgtcttgac |
41762954 |
T |
|
| Q |
301 |
cttcatgtacgtcgtccttctctgct |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
41762953 |
cttcatgtacgtcgtccttctctgct |
41762928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University