View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11591_low_12 (Length: 240)
Name: NF11591_low_12
Description: NF11591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11591_low_12 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 20491743 - 20491982
Alignment:
| Q |
1 |
tgtaaatgtgaccgaaactctgccttcatatatatcccaatcagaactttatcactacatccatctttaactctttctttcaaccgttctcatggattca |
100 |
Q |
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| T |
20491743 |
tgtaaatgtgaccgaaactctgccttcatatatatcccaatcagaaccttatcactacatccatctttaactctttctttgaaccgttctcatggattca |
20491842 |
T |
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| Q |
101 |
attgttaatcatgaaaatggtaacaacaagcctcttcatgttgtaatgatcccatggttagccatgggacacatgtacccttatttcgagttagcaaaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20491843 |
attgttaatcatgaaaatggtaacaacaagcctcttcatgttgtaatgatcccttggctagctatgggacacatgtacccttatttcgagttagcaaaaa |
20491942 |
T |
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| Q |
201 |
ttcttgctcaaaagggtcacactgtcaccttcataaactc |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
20491943 |
ttcttgctcaaaagggtcacactgtcaccttcataaactc |
20491982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 240
Target Start/End: Original strand, 1361066 - 1361182
Alignment:
| Q |
124 |
caacaagcctcttcatgttgtaatgatcccatggttagccatgggacacatgtacccttatttcgagttagcaaaaattcttgctcaaaagggtcacact |
223 |
Q |
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| T |
1361066 |
caacaaacctcttcatattgtaatgctcccatggctggctatgggacacatatacccttactttgaagtagccaaaattctagcttcaaagggtcacact |
1361165 |
T |
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| Q |
224 |
gtcaccttcataaactc |
240 |
Q |
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| T |
1361166 |
gtcaccttcatcaactc |
1361182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 240
Target Start/End: Original strand, 1354181 - 1354296
Alignment:
| Q |
125 |
aacaagcctcttcatgttgtaatgatcccatggttagccatgggacacatgtacccttatttcgagttagcaaaaattcttgctcaaaagggtcacactg |
224 |
Q |
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| T |
1354181 |
aacaaacctcttcatattgtaatgctcccatggctagctatgggacatatatacccttactttgaagtagccaaaattctagcttcaaagggtcacactg |
1354280 |
T |
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| Q |
225 |
tcaccttcataaactc |
240 |
Q |
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|||||||||| ||||| |
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| T |
1354281 |
tcaccttcatcaactc |
1354296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 1356941 - 1356996
Alignment:
| Q |
125 |
aacaagcctcttcatgttgtaatgatcccatggttagccatgggacacatgtaccc |
180 |
Q |
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| T |
1356941 |
aacaaacctcttcatgttgtcatgtttccatggatagccatgggacacatgtaccc |
1356996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 53 - 228
Target Start/End: Original strand, 29953660 - 29953835
Alignment:
| Q |
53 |
cactacatccatctttaactctttctttcaaccgttctcatggattcaattgttaatcatgaaaatggtaacaacaagcctcttcatgttgtaatgatcc |
152 |
Q |
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||||||||||||| || |||||||||| ||||||| |||||||||||||||||| ||||| |||| || ||||||||||||||| |||||| ||| |
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| T |
29953660 |
cactacatccatccatagctctttctttaaaccgtttccatggattcaattgttaagcatgagaatgagaattgcaagcctcttcatgtcgtaatgctcc |
29953759 |
T |
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| Q |
153 |
catggttagccatgggacacatgtacccttatttcgagttagcaaaaattcttgctcaaaagggtcacactgtcac |
228 |
Q |
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| || | || ||||||||||| ||||||||||||||||| || || |||||||||||||| ||||||||||||| |
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| T |
29953760 |
cttgactcgctatgggacacatatacccttatttcgagttggccaagattcttgctcaaaatcgtcacactgtcac |
29953835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 240
Target Start/End: Complemental strand, 51370718 - 51370606
Alignment:
| Q |
128 |
aagcctcttcatgttgtaatgatcccatggttagccatgggacacatgtacccttatttcgagttagcaaaaattcttgctcaaaagggtcacactgtca |
227 |
Q |
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|||||||||||||||| |||| |||||||| | || ||||||||| | ||||||||| ||||| || ||||||||||||||||| ||||||||||||| |
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| T |
51370718 |
aagcctcttcatgttgcaatgctcccatggcttgctatgggacacgtactcccttattttgagttggccaaaattcttgctcaaaatggtcacactgtca |
51370619 |
T |
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| Q |
228 |
ccttcataaactc |
240 |
Q |
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|||| || ||||| |
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| T |
51370618 |
cctttatcaactc |
51370606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 11529699 - 11529808
Alignment:
| Q |
127 |
caagcctcttcatgttgtaatgatcccatggttagccatgggacacatgtacccttatttcgagttagcaaaaattcttgctcaaaagggtcacactgtc |
226 |
Q |
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||||||||||||||||| |||| |||| ||| |||| ||||||||||| ||||||||||| || || || |||||||||||||||||||||||||||||| |
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| T |
11529699 |
caagcctcttcatgttgcaatgctcccttggctagctatgggacacatatacccttattttgaattggccaaaattcttgctcaaaagggtcacactgtc |
11529798 |
T |
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| Q |
227 |
accttcataa |
236 |
Q |
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||||| |||| |
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| T |
11529799 |
accttaataa |
11529808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 12845690 - 12845802
Alignment:
| Q |
126 |
acaagcctcttcatgttgtaatgatcccatggttagccatgggacacatgtacccttatttcgagttagcaaaaattcttgctcaaaagggtcacactgt |
225 |
Q |
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||||||||||||||||||||||| | |||||| |||| ||||||||||| ||||||||||| ||||| || || ||||||||||||||||||||| ||| |
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| T |
12845690 |
acaagcctcttcatgttgtaatggttccatggctagctatgggacacatatacccttattttgagttggccaagattcttgctcaaaagggtcactatgt |
12845789 |
T |
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| Q |
226 |
caccttcataaac |
238 |
Q |
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|||||||||||| |
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| T |
12845790 |
taccttcataaac |
12845802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 240
Target Start/End: Original strand, 14588115 - 14588270
Alignment:
| Q |
91 |
catggattcaattgttaatcatgaaaatggtaacaa------caagcctcttcatgttgtaatgatcccatggttagccatgggacacatgtacccttat |
184 |
Q |
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||||| |||||||||||||||||| |||| ||||| |||| | ||||||||||||||| | |||||| |||| ||||||||||| |||| | |
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| T |
14588115 |
catggcttcaattgttaatcatgagaatgagaacaagaatgtcaagtcccttcatgttgtaatggtaccatggctagctatgggacacatactacctttt |
14588214 |
T |
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| Q |
185 |
ttcgagttagcaaaaattcttgctcaaaagggtcacactgtcaccttcataaactc |
240 |
Q |
| |
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||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
14588215 |
ttcgagttagccaaaattcttgctcaaaatggtcacactgtcacattcataaactc |
14588270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 240
Target Start/End: Original strand, 14621773 - 14621928
Alignment:
| Q |
91 |
catggattcaattgttaatcatgaaaatggtaacaa------caagcctcttcatgttgtaatgatcccatggttagccatgggacacatgtacccttat |
184 |
Q |
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||||| |||||||||||||||||| |||| ||||| |||| | ||||||||||||||| | |||||| |||| ||||||||||| |||| | |
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| T |
14621773 |
catggcttcaattgttaatcatgagaatgagaacaagaatgtcaagtcccttcatgttgtaatggtaccatggctagctatgggacacatactacctttt |
14621872 |
T |
|
| Q |
185 |
ttcgagttagcaaaaattcttgctcaaaagggtcacactgtcaccttcataaactc |
240 |
Q |
| |
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||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
14621873 |
ttcgagttagccaaaattcttgctcaaaatggtcacactgtcacgttcataaactc |
14621928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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