View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11591_low_13 (Length: 239)
Name: NF11591_low_13
Description: NF11591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11591_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 28670087 - 28670310
Alignment:
| Q |
1 |
agaaaaattaatattgatcatagtcaaaaatcaattatatttatgagctttgatacattgttactctacatttcaccatgttactatagttttcagtgtt |
100 |
Q |
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| T |
28670087 |
agaaaaattaatattgatcatagtcaaaaatcaattatatttatgagctttgatacattgttactctacatttcaccatgttactatagttttcagtgtt |
28670186 |
T |
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| Q |
101 |
gtcatttgtgtttatctagatacaattatttattaagttgaatgaaaatactaattgtatgcatgatctactcacctgtagaagatctccaatgttcact |
200 |
Q |
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| T |
28670187 |
gtcatttgtgtttatctagatacaattatttattaagttgaatgaaaatactaattgtatgcatgatgtactcacctgtagaagatctccaatgttcact |
28670286 |
T |
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| Q |
201 |
acaagagctccatgaatgggaggt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
28670287 |
acaagagctccatgaatgggaggt |
28670310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 28639371 - 28639442
Alignment:
| Q |
151 |
ctaattgtatgcatgatctactcacctgtagaagatctccaatgttcactacaagagctccatgaatgggag |
222 |
Q |
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|||||| |||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
28639371 |
ctaattttatgcatgatgaactcacctgtagaagatctccgacgttcactacaagagctccatgaatgggag |
28639442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 28648678 - 28648749
Alignment:
| Q |
151 |
ctaattgtatgcatgatctactcacctgtagaagatctccaatgttcactacaagagctccatgaatgggag |
222 |
Q |
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| T |
28648678 |
ctaattttatgcatgatgaactcacttgaagaagatccccaacgttcactacaagagctccatgaatgggag |
28648749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 1094365 - 1094316
Alignment:
| Q |
174 |
acctgtagaagatctccaatgttcactacaagagctccatgaatgggagg |
223 |
Q |
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| T |
1094365 |
acctgtagaagatctcctatgtttacaacaagagctccatgtatcggagg |
1094316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 49464269 - 49464309
Alignment:
| Q |
174 |
acctgtagaagatctccaatgttcactacaagagctccatg |
214 |
Q |
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| T |
49464269 |
acctgtagaagatctccaacgtttacaacaagagctccatg |
49464309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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