View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11591_low_15 (Length: 228)
Name: NF11591_low_15
Description: NF11591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11591_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 44629825 - 44629627
Alignment:
| Q |
18 |
ataataacgcatcaaagcttctgtttctttttgtatttcgct---gcctctnnnnnnnttatgctaatctctctcttctggatttcattactctgtatca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44629825 |
ataataacgcatcaaagcttctgtttctttttgtatttcgctactgcctctaaaaaaaatatgctaatctctctcttctggatttcattactctgtatca |
44629726 |
T |
|
| Q |
115 |
ttttagatttcatcttccaaagcaagtcaaacagaatactttagtatatatttcatgaatcaaataacactttaaaacaagccaagccaccgtcctttg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44629725 |
ttttagatttcatcttccaaagcaagtcaaaaagaatactttagtatatatttcatgaatcaattaacactttaaaacaagccaagccaccgtcctttg |
44629627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University