View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11591_low_17 (Length: 221)

Name: NF11591_low_17
Description: NF11591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11591_low_17
NF11591_low_17
[»] chr4 (10 HSPs)
chr4 (14-205)||(1524619-1524810)
chr4 (14-145)||(55505241-55505372)
chr4 (38-89)||(1528363-1528414)
chr4 (38-89)||(12120302-12120353)
chr4 (41-138)||(1545612-1545709)
chr4 (22-95)||(553361-553434)
chr4 (32-153)||(570175-570296)
chr4 (14-81)||(546809-546876)
chr4 (14-73)||(1513540-1513599)
chr4 (22-74)||(558401-558453)
[»] chr3 (3 HSPs)
chr3 (14-145)||(51113917-51114048)
chr3 (14-154)||(514864-515004)
chr3 (22-152)||(51121037-51121167)
[»] chr6 (6 HSPs)
chr6 (32-82)||(6402755-6402805)
chr6 (32-72)||(6394769-6394809)
chr6 (14-72)||(14820598-14820656)
chr6 (32-81)||(6594760-6594809)
chr6 (38-82)||(491388-491432)
chr6 (32-64)||(12102219-12102251)
[»] chr7 (1 HSPs)
chr7 (21-72)||(15092294-15092345)
[»] chr8 (2 HSPs)
chr8 (21-97)||(27922388-27922464)
chr8 (32-73)||(21235462-21235503)
[»] chr1 (1 HSPs)
chr1 (33-89)||(9580957-9581013)
[»] scaffold0041 (1 HSPs)
scaffold0041 (21-81)||(39081-39140)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 1524619 - 1524810
Alignment:
Q  14 cagagaggggagtgaactatgtgatagaaaactgcacacaactgagagagattaatttgaggggttgttgtaaagttcatgctagctttgttgccttaat 113  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1524619 cagagaggggagtgaattatgtgatagaaaactgcacacaactgagagagattaatttgaggggttgttgtaaagttcatgctagctttgttgcctcaat 1524718  T
Q  114 gctattatcaagaccatcattgagagagataattgttccaagtcttcgtcatttcagtgttacagagagagaattcttcaagcggcaaatat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1524719 gctattatcaagaccatcattgagagagataattgttccaagtcttcgtcatttcagtgttacagagagagaattcttcaagcggcatatat 1524810  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 145
Target Start/End: Original strand, 55505241 - 55505372
Alignment:
Q  14 cagagaggggagtgaactatgtgatagaaaactgcacacaactgagagagattaatttgaggggttgttgtaaagttcatgctagctttgttgccttaat 113  Q
    |||||| |||||||||  | ||| ||||||||||||||||||| |||||||| || ||||  ||||||  |||||| ||| ||||  |||||| || |||    
T  55505241 cagagaagggagtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatactagtgttgttgactcaat 55505340  T
Q  114 gctattatcaagaccatcattgagagagataa 145  Q
    | |||| ||||| |||||||||||| ||||||    
T  55505341 ggtattttcaaggccatcattgagaaagataa 55505372  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 1528363 - 1528414
Alignment:
Q  38 tagaaaactgcacacaactgagagagattaatttgaggggttgttgtaaagt 89  Q
    |||||||||||||||||||||||||||| ||||||  |||||||||||||||    
T  1528363 tagaaaactgcacacaactgagagagataaatttgcagggttgttgtaaagt 1528414  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 12120302 - 12120353
Alignment:
Q  38 tagaaaactgcacacaactgagagagattaatttgaggggttgttgtaaagt 89  Q
    |||||||||||||||||||||||||||| ||||||  |||||||||||||||    
T  12120302 tagaaaactgcacacaactgagagagataaatttgcagggttgttgtaaagt 12120353  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 1545709 - 1545612
Alignment:
Q  41 aaaactgcacacaactgagagagattaatttgaggggttgttgtaaagttcatgctagctttgttgccttaatgctattatcaagaccatcattgaga 138  Q
    |||||||||||||||| |||| ||| |||||||||||||||  |||||| |||||||   || |||| ||| |  |||||||||| ||||||||||||    
T  1545709 aaaactgcacacaactaagagtgatcaatttgaggggttgtgataaagtgcatgctaatgttattgctttattagtattatcaaggccatcattgaga 1545612  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 553434 - 553361
Alignment:
Q  22 ggagtgaactatgtgatagaaaactgcacacaactgagagagattaatttgaggggttgttgtaaagttcatgc 95  Q
    ||||||||  ||||| ||||||||||||||||||| ||||||||  ||||| ||||||||  |||||| |||||    
T  553434 ggagtgaatcatgtggtagaaaactgcacacaacttagagagatcgatttggggggttgtgataaagtgcatgc 553361  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 153
Target Start/End: Complemental strand, 570296 - 570175
Alignment:
Q  32 atgtgatagaaaactgcacacaactgagagagattaatttgaggggttgttgtaaagttcatgctagctttgttgccttaatgctattatcaagaccatc 131  Q
    ||||| |||||||||||||||||||||| ||||| ||||||| |   || | |||||| |||   |   |||||| ||  ||| ||||||||||||||||    
T  570296 atgtggtagaaaactgcacacaactgagggagatcaatttgaagaactgctataaagtgcataaaaatattgttgactcgatgatattatcaagaccatc 570197  T
Q  132 attgagagagataattgttcca 153  Q
    ||||||| |||||| |||||||    
T  570196 attgagaaagataactgttcca 570175  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 546876 - 546809
Alignment:
Q  14 cagagaggggagtgaactatgtgatagaaaactgcacacaactgagagagattaatttgaggggttgt 81  Q
    |||||| |||||||||  ||||| |||||||||||||| |||| |||||||| ||||| |||| ||||    
T  546876 cagagaagggagtgaaacatgtgctagaaaactgcacaaaactaagagagatcaatttaagggcttgt 546809  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 1513540 - 1513599
Alignment:
Q  14 cagagaggggagtgaactatgtgatagaaaactgcacacaactgagagagattaatttga 73  Q
    |||||| |||||||||   |||| ||||||| |||||||||||||||||||| |||||||    
T  1513540 cagagatgggagtgaagcttgtgctagaaaaatgcacacaactgagagagatcaatttga 1513599  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 558453 - 558401
Alignment:
Q  22 ggagtgaactatgtgatagaaaactgcacacaactgagagagattaatttgag 74  Q
    ||||||||  ||||| ||||||||||||||||| ||||||| || ||||||||    
T  558453 ggagtgaagcatgtgctagaaaactgcacacaaatgagagaaatcaatttgag 558401  T

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Target: chr3 (Bit Score: 60; Significance: 9e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 14 - 145
Target Start/End: Original strand, 51113917 - 51114048
Alignment:
Q  14 cagagaggggagtgaactatgtgatagaaaactgcacacaactgagagagattaatttgaggggttgttgtaaagttcatgctagctttgttgccttaat 113  Q
    |||||| |||||||||  ||||| ||||||| |||||| |||| |||||||||||||| | |||||||| |||||| |||||||  |||||||||| |||    
T  51113917 cagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaagagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctcaat 51114016  T
Q  114 gctattatcaagaccatcattgagagagataa 145  Q
    | |||| ||||| |||||||||||||| ||||    
T  51114017 gatattttcaaggccatcattgagagaaataa 51114048  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 514864 - 515004
Alignment:
Q  14 cagagaggggagtgaactatgtgatagaaaactgcacacaactgagagagattaatttgaggggttgttgtaaagttcatgctagctttgttgccttaat 113  Q
    |||||| |||||||||  ||||| |  |||||||||||| |||||||||||| ||||| || ||||||  |||||| |||  ||   ||||||||  |||    
T  514864 cagagacgggagtgaagcatgtggtgaaaaactgcacacgactgagagagatcaatttaagaggttgtaataaagtgcattataatgttgttgccccaat 514963  T
Q  114 gctattatcaagaccatcattgagagagataattgttccaa 154  Q
    | |||| ||||| |||||||||||| ||||| ||| |||||    
T  514964 ggtattttcaaggccatcattgagaaagatagttgctccaa 515004  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 152
Target Start/End: Original strand, 51121037 - 51121167
Alignment:
Q  22 ggagtgaactatgtgatagaaaactgcacacaactgagagagattaatttgaggggttgttgtaaagttcatgctagctttgttgccttaatgctattat 121  Q
    ||||||||  ||||| ||||||||||||||||| |||||| ||| || ||||||  ||| | |||||| ||||||   |||||||||| |||  | || |    
T  51121037 ggagtgaaacatgtggtagaaaactgcacacaattgagagtgatcaacttgaggtattgctataaagtccatgctgattttgttgcctcaatagtctttt 51121136  T
Q  122 caagaccatcattgagagagataattgttcc 152  Q
    ||||  |||| |||||| ||||| |||||||    
T  51121137 caaggtcatcgttgagaaagatatttgttcc 51121167  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 6402805 - 6402755
Alignment:
Q  32 atgtgatagaaaactgcacacaactgagagagattaatttgaggggttgtt 82  Q
    |||||||||||||||| |||||||||||||||||| ||||||||| |||||    
T  6402805 atgtgatagaaaactgtacacaactgagagagatttatttgagggtttgtt 6402755  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 6394809 - 6394769
Alignment:
Q  32 atgtgatagaaaactgcacacaactgagagagattaatttg 72  Q
    ||||| ||||||||||||||||| |||||||||||||||||    
T  6394809 atgtggtagaaaactgcacacaattgagagagattaatttg 6394769  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 14820656 - 14820598
Alignment:
Q  14 cagagaggggagtgaactatgtgatagaaaactgcacacaactgagagagattaatttg 72  Q
    |||||| ||| |||||  ||||| || ||||||||||||| ||||||||||||||||||    
T  14820656 cagagaagggtgtgaaacatgtggtaaaaaactgcacacagctgagagagattaatttg 14820598  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 6594760 - 6594809
Alignment:
Q  32 atgtgatagaaaactgcacacaactgagagagattaatttgaggggttgt 81  Q
    ||||| ||||||||||||||||| ||||||| ||  ||||||||||||||    
T  6594760 atgtggtagaaaactgcacacaattgagagaaatgtatttgaggggttgt 6594809  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 491432 - 491388
Alignment:
Q  38 tagaaaactgcacacaactgagagagattaatttgaggggttgtt 82  Q
    ||||||||||||| || ||||||||||| ||||||||||| ||||    
T  491432 tagaaaactgcacgcagctgagagagatcaatttgaggggctgtt 491388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 12102251 - 12102219
Alignment:
Q  32 atgtgatagaaaactgcacacaactgagagaga 64  Q
    ||||| |||||||||||||||||||||||||||    
T  12102251 atgtggtagaaaactgcacacaactgagagaga 12102219  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 15092294 - 15092345
Alignment:
Q  21 gggagtgaactatgtgatagaaaactgcacacaactgagagagattaatttg 72  Q
    |||||||||  ||||| ||||||||||||||||| |||||||||||||||||    
T  15092294 gggagtgaaacatgtgctagaaaactgcacacaattgagagagattaatttg 15092345  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 27922464 - 27922388
Alignment:
Q  21 gggagtgaactatgtgatagaaaactgcacacaactgagagagattaatttgaggggttgttgtaaagttcatgcta 97  Q
    |||||||||| ||||| ||||||||||||| ||||||||| |||||| ||||   ||||||  |||||| |||||||    
T  27922464 gggagtgaaccatgtggtagaaaactgcactcaactgagaaagattagtttggatggttgtcataaagtacatgcta 27922388  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 21235503 - 21235462
Alignment:
Q  32 atgtgatagaaaactgcacacaactgagagagattaatttga 73  Q
    ||||| |||||||||||||||||||||| ||||| |||||||    
T  21235503 atgtggtagaaaactgcacacaactgagggagatcaatttga 21235462  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 9581013 - 9580957
Alignment:
Q  33 tgtgatagaaaactgcacacaactgagagagattaatttgaggggttgttgtaaagt 89  Q
    |||| ||||||| ||||||||||||  ||||||| ||||||||||||||| ||||||    
T  9581013 tgtggtagaaaattgcacacaactggaagagattgatttgaggggttgttataaagt 9580957  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 39140 - 39081
Alignment:
Q  21 gggagtgaactatgtgatagaaaactgcacacaactgagagagattaatttgaggggttgt 81  Q
    |||||||||  ||||| || | |||||||| ||||||||||||||||| ||||||||||||    
T  39140 gggagtgaaacatgtggtaaacaactgcacgcaactgagagagattaa-ttgaggggttgt 39081  T

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