View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11591_low_4 (Length: 403)

Name: NF11591_low_4
Description: NF11591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11591_low_4
NF11591_low_4
[»] chr4 (8 HSPs)
chr4 (19-384)||(644479-644831)
chr4 (51-116)||(12121588-12121653)
chr4 (51-114)||(553384-553447)
chr4 (51-116)||(1513535-1513600)
chr4 (67-122)||(570248-570303)
chr4 (51-113)||(546819-546881)
chr4 (51-108)||(55505236-55505293)
chr4 (64-116)||(1508147-1508199)
[»] chr3 (5 HSPs)
chr3 (23-359)||(1656912-1657247)
chr3 (51-104)||(51764571-51764624)
chr3 (51-107)||(51113912-51113968)
chr3 (42-113)||(514850-514921)
chr3 (61-108)||(51121034-51121081)
[»] chr8 (3 HSPs)
chr8 (23-282)||(28246396-28246654)
chr8 (67-122)||(21235455-21235510)
chr8 (51-115)||(34936294-34936358)
[»] chr6 (8 HSPs)
chr6 (23-239)||(11936378-11936595)
chr6 (23-239)||(11948358-11948575)
chr6 (51-107)||(6603333-6603389)
chr6 (61-114)||(28934954-28935007)
chr6 (59-107)||(6432073-6432121)
chr6 (42-102)||(6585359-6585419)
chr6 (59-107)||(10579876-10579924)
chr6 (51-107)||(14820605-14820661)
[»] chr2 (3 HSPs)
chr2 (214-359)||(31340055-31340198)
chr2 (214-359)||(31333325-31333468)
chr2 (51-115)||(45245216-45245280)
[»] chr1 (3 HSPs)
chr1 (51-115)||(29719054-29719118)
chr1 (51-104)||(19468630-19468683)
chr1 (51-115)||(29659027-29659091)
[»] chr5 (1 HSPs)
chr5 (60-105)||(20478222-20478267)


Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 384
Target Start/End: Complemental strand, 644831 - 644479
Alignment:
Q  19 cttgtgcaactgtcacttaaattttgtgaaggtgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttgaagt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  644831 cttgtgcaactgtcacttaaattttgtgaaggtgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttgaagt 644732  T
Q  119 actgtgatgaggtgctaataagtccttgcctagcaactcggtatcgttttaatctcaaagagcggagactcttatcacggcaaggatgtcttgtttgcta 218  Q
    ||||||||           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  644731 actgtgat-----------aagtcgttgcctagcaactcggtatcgttttaatctcaaagagcggagactcttatcacggcaaggatgtcttgtttgcta 644643  T
Q  219 tgaagtttgaattgtgaatttctctaatgtttttggttttcagatttacttctatgagaaattacttttgttctcttttttaacgtaattgtatatatgc 318  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  644642 tgaagtttgaattgtgaatttct--aatgtttttggttttcagatttacttctatgagaaattacttttgttctcttttttaacgtaattgtatatatgc 644545  T
Q  319 tcatcatgttatgtgtgcatgacaaatgaataagttattaatatataatgcaagctattgattgtg 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  644544 tcatcatgttatgtgtgcatgacaaatgaataagttattaatatataatgcaagctattgattgtg 644479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 12121588 - 12121653
Alignment:
Q  51 tgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttgaa 116  Q
    |||||| ||||  |||||||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  12121588 tgtcacagagatgggagtgaagcatgtggtagaaaaatgcacacaactaagagagatcgatttgaa 12121653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 553447 - 553384
Alignment:
Q  51 tgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttg 114  Q
    |||||| || ||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||    
T  553447 tgtcacagataaaggagtgaatcatgtggtagaaaactgcacacaacttagagagatcgatttg 553384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 1513535 - 1513600
Alignment:
Q  51 tgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttgaa 116  Q
    |||||| ||||  |||||||| | |||| | ||||||||||||||||||||||||||| |||||||    
T  1513535 tgtcacagagatgggagtgaagcttgtgctagaaaaatgcacacaactgagagagatcaatttgaa 1513600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 570303 - 570248
Alignment:
Q  67 gtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttgaagtactg 122  Q
    ||||| |||||||| ||||| |||||||||||||| |||||| |||||||| ||||    
T  570303 gtgaatcatgtggtagaaaactgcacacaactgagggagatcaatttgaagaactg 570248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 546881 - 546819
Alignment:
Q  51 tgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgattt 113  Q
    |||||| ||||| ||||||||||||||| | ||||| |||||| |||| ||||||||| ||||    
T  546881 tgtcacagagaagggagtgaaacatgtgctagaaaactgcacaaaactaagagagatcaattt 546819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 55505236 - 55505293
Alignment:
Q  51 tgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagatc 108  Q
    |||||| ||||| ||||||||||| ||| | ||||| ||||||||||| |||||||||    
T  55505236 tgtcacagagaagggagtgaaacacgtgttagaaaactgcacacaactaagagagatc 55505293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 1508147 - 1508199
Alignment:
Q  64 ggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttgaa 116  Q
    |||||||| |||| | | ||||||||||||||||| ||||||||| |||||||    
T  1508147 ggagtgaagcatgcgctagaaaaatgcacacaactaagagagatcaatttgaa 1508199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 23 - 359
Target Start/End: Complemental strand, 1657247 - 1656912
Alignment:
Q  23 tgcaactgtcacttaaattttgtgaaggtgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttgaagtactg 122  Q
    |||||||||||||||||||||||||||||||  | || ||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1657247 tgcaactgtcacttaaattttgtgaaggtgttgcagacaaaggagtgacgcatgtggttgaaaaatgcacacaactgagagaggtcgatttgaagtactg 1657148  T
Q  123 tgatgaggtgctaataagtccttgcctagcaactcggtatcg-ttttaatctcaaagagcggagactcttatcacggcaaggatgtcttgtttgctatga 221  Q
    |||||||||||||||||||| |||||| ||| |||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1657147 tgatgaggtgctaataagtcgttgcctcgcagctcgatatcgtttttaatctcaaagagcggagactcttatcacgtcaaggatgtcttgtttgctatga 1657048  T
Q  222 agtttgaattgtgaatttctctaatgtttttggttttcagatttacttctatgagaaattacttttgttctcttttttaacgtaattgtatatatgctca 321  Q
    |||||||||||||||||  | |||||||||| ||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||    
T  1657047 agtttgaattgtgaatt--tataatgttttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatatatgctca 1656950  T
Q  322 tcatgttatgtgtgcatgacaaatgaataagttattaa 359  Q
    |||||||||||| |||||||||||||||||||||||||    
T  1656949 tcatgttatgtgcgcatgacaaatgaataagttattaa 1656912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 51764571 - 51764624
Alignment:
Q  51 tgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagaga 104  Q
    ||||| |||||| ||||||||||||||||||||||| ||||||||| |||||||    
T  51764571 tgtcaaggagaagggagtgaaacatgtggttgaaaactgcacacaattgagaga 51764624  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 51113912 - 51113968
Alignment:
Q  51 tgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagat 107  Q
    |||||| ||||| |||||||| |||||||| |||||||||||| |||| ||||||||    
T  51113912 tgtcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaagagagat 51113968  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 514850 - 514921
Alignment:
Q  42 ttgtgaaggtgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgattt 113  Q
    |||||||||| |||| ||||  |||||||| ||||||||  |||| ||||||| ||||||||||||| ||||    
T  514850 ttgtgaaggtatcacagagacgggagtgaagcatgtggtgaaaaactgcacacgactgagagagatcaattt 514921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 51121034 - 51121081
Alignment:
Q  61 aaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagatc 108  Q
    |||||||||||||||||||| ||||| ||||||||| |||||| ||||    
T  51121034 aaaggagtgaaacatgtggtagaaaactgcacacaattgagagtgatc 51121081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 23 - 282
Target Start/End: Original strand, 28246396 - 28246654
Alignment:
Q  23 tgcaactgtcacttaaattttgtgaaggtgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttgaagtactg 122  Q
    |||||||||||||||||||||||||||||||||| || ||| ||||||  ||||||||||||||||||||||||||||||||| || |||||||||||||    
T  28246396 tgcaactgtcacttaaattttgtgaaggtgtcacagacaaatgagtgacgcatgtggttgaaaaatgcacacaactgagagaggtcaatttgaagtactg 28246495  T
Q  123 tgatgaggtgctaataagtccttgcctagcaactcggtatcg-ttttaatctcaaagagcggagactcttatcacggcaaggatgtcttgtttgctatga 221  Q
    |||| ||||||||||||||| |||||| ||| |||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  28246496 tgataaggtgctaataagtcgttgcctcgcagctcggtatcgtttttaatctcaaagagcggagactcttatcacatcaaggatgtcttgtttgctatga 28246595  T
Q  222 agtttgaattgtgaatttctctaatgtttttggttttcagatttacttctatgagaaatta 282  Q
    |||||||||||||||||  | |||||||||| |||||||||||||||||||||||||||||    
T  28246596 agtttgaattgtgaatt--tataatgttttttgttttcagatttacttctatgagaaatta 28246654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 21235510 - 21235455
Alignment:
Q  67 gtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttgaagtactg 122  Q
    ||||| |||||||| ||||| |||||||||||||| |||||| |||||||| ||||    
T  21235510 gtgaatcatgtggtagaaaactgcacacaactgagggagatcaatttgaagaactg 21235455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 34936294 - 34936358
Alignment:
Q  51 tgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttga 115  Q
    |||||||||||| |||||  | | |||||||||||| ||||||||| |||| |||||| ||||||    
T  34936294 tgtcacggagaagggagttgagcgtgtggttgaaaattgcacacaattgagggagatcaatttga 34936358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 166; Significance: 1e-88; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 11936378 - 11936595
Alignment:
Q  23 tgcaactgtcacttaaattttgtgaaggtgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttgaagtactg 122  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||  |||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  11936378 tgcaactgtcacttaaattttgtgaaggtgtcacagacaaaggagtgacgcatgtggttgaaaaatgcacacaaatgagagaggtcgatttgaagtactg 11936477  T
Q  123 tgatgaggtgctaataagtccttgcctagcaactcggtatcg-ttttaatctcaaagagcggagactcttatcacggcaaggatgtcttgtttgctatga 221  Q
    |||| ||||||||||||||| |||||| ||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11936478 tgataaggtgctaataagtcgttgcctcgcagctcggtatcgtttttaatctcaaagagcggagactcttatcacgtcaaggatgtcttgtttgctatga 11936577  T
Q  222 agtttgaattgtgaattt 239  Q
    ||||||||||||||||||    
T  11936578 agtttgaattgtgaattt 11936595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 11948358 - 11948575
Alignment:
Q  23 tgcaactgtcacttaaattttgtgaaggtgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttgaagtactg 122  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||  |||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  11948358 tgcaactgtcacttaaattttgtgaaggtgtcacagacaaaggagtgacgcatgtggttgaaaaatgcacacaaatgagagaggtcgatttgaagtactg 11948457  T
Q  123 tgatgaggtgctaataagtccttgcctagcaactcggtatcg-ttttaatctcaaagagcggagactcttatcacggcaaggatgtcttgtttgctatga 221  Q
    |||| ||||||||||||||| |||||| ||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11948458 tgataaggtgctaataagtcgttgcctcgcagctcggtatcgtttttaatctcaaagagcggagactcttatcacgtcaaggatgtcttgtttgctatga 11948557  T
Q  222 agtttgaattgtgaattt 239  Q
    ||||||||||||||||||    
T  11948558 agtttgaattgtgaattt 11948575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 6603333 - 6603389
Alignment:
Q  51 tgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagat 107  Q
    |||||| ||||||||||||||||||||||| ||||| |||| |||||||||| ||||    
T  6603333 tgtcacagagaaaggagtgaaacatgtggtagaaaactgcaaacaactgagaaagat 6603389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 28935007 - 28934954
Alignment:
Q  61 aaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttg 114  Q
    ||||||||||| |||||||| ||||| ||||||||||| ||||||||| |||||    
T  28935007 aaaggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttg 28934954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 6432121 - 6432073
Alignment:
Q  59 agaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagat 107  Q
    |||| |||||||||| |||||| ||||||||||||||| ||||| ||||    
T  6432121 agaagggagtgaaacttgtggtagaaaaatgcacacaattgagaaagat 6432073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 6585359 - 6585419
Alignment:
Q  42 ttgtgaaggtgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgaga 102  Q
    |||||||  |||||| ||||| ||| ||||||||||||| ||||  |||||||||||||||    
T  6585359 ttgtgaaaatgtcacagagaagggactgaaacatgtggtagaaatttgcacacaactgaga 6585419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 10579876 - 10579924
Alignment:
Q  59 agaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagat 107  Q
    |||| ||||| ||||||||||| ||||| ||||||||||| ||||||||    
T  10579876 agaagggagttaaacatgtggtagaaaactgcacacaacttagagagat 10579924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 14820661 - 14820605
Alignment:
Q  51 tgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagat 107  Q
    |||||| ||||| || ||||||||||||||  |||| |||||||| |||||||||||    
T  14820661 tgtcacagagaagggtgtgaaacatgtggtaaaaaactgcacacagctgagagagat 14820605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 214 - 359
Target Start/End: Original strand, 31340055 - 31340198
Alignment:
Q  214 tgctatgaagtttgaattgtgaatttctctaatgtttttggttttcagatttacttctatgagaaattacttttgttctcttttttaacgtaattgtata 313  Q
    |||||||||||||||||||||||||| |  ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||    
T  31340055 tgctatgaagtttgaattgtgaatttat--aatgttttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtata 31340152  T
Q  314 tatgctcatcatgttatgtgtgcatgacaaatgaataagttattaa 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31340153 tatgctcatcatgttatgtgtgcatgacaaatgaataagttattaa 31340198  T

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Target: chr2; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 214 - 359
Target Start/End: Original strand, 31333325 - 31333468
Alignment:
Q  214 tgctatgaagtttgaattgtgaatttctctaatgtttttggttttcagatttacttctatgagaaattacttttgttctcttttttaacgtaattgtata 313  Q
    |||||||||||||||||||||||||| |  ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||    
T  31333325 tgctatgaagtttgaattgtgaatttat--aatgttttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtata 31333422  T
Q  314 tatgctcatcatgttatgtgtgcatgacaaatgaataagttattaa 359  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  31333423 tatgctcatcatgttatgtgagcatgacaaatgaataagttattaa 31333468  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 45245216 - 45245280
Alignment:
Q  51 tgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttga 115  Q
    |||||| || || ||||||||||||||||| ||||| ||||||||||| | ||||||| ||||||    
T  45245216 tgtcacagataagggagtgaaacatgtggtagaaaattgcacacaacttacagagatcaatttga 45245280  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 29719054 - 29719118
Alignment:
Q  51 tgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttga 115  Q
    |||||| ||||| |||||||||||||||||| |||| ||||  |||||||| |||||| ||||||    
T  29719054 tgtcacagagaatggagtgaaacatgtggttcaaaactgcaagcaactgagggagatcaatttga 29719118  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 19468630 - 19468683
Alignment:
Q  51 tgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagaga 104  Q
    |||||| |||||||||||||||||||||   ||||| ||| |||||||||||||    
T  19468630 tgtcacagagaaaggagtgaaacatgtgaaagaaaattgctcacaactgagaga 19468683  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 29659027 - 29659091
Alignment:
Q  51 tgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttga 115  Q
    |||||| ||||| ||||| |||||||||||| |||| ||||| |||||||  |||||| ||||||    
T  29659027 tgtcacagagaatggagtaaaacatgtggttcaaaactgcacgcaactgactgagatcaatttga 29659091  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 20478222 - 20478267
Alignment:
Q  60 gaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagag 105  Q
    |||||||| ||||||||| || ||||| ||||||||||||||||||    
T  20478222 gaaaggagcgaaacatgtcgtagaaaactgcacacaactgagagag 20478267  T

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