View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11591_low_7 (Length: 313)
Name: NF11591_low_7
Description: NF11591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11591_low_7 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 12 - 313
Target Start/End: Original strand, 28669793 - 28670094
Alignment:
| Q |
12 |
atgaacactaagttgcttctttgtgtgacaacttgaagggtgatagtgcagaagctccaaggccgtttgcaaaacgatatgccaaatactctttcaaaga |
111 |
Q |
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| T |
28669793 |
atgaacactaagttgcttctttgtgtgacaacttgaagggtgatagtgcagaagctccaaggccatttgcaaaacgatatgccaaatactctttcaaaga |
28669892 |
T |
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| Q |
112 |
agtatctctgtatattggtgaattttctttagataacagttcctttattggtcctatcactttttccataccctcatgtgagtaatcatgttgtgttcta |
211 |
Q |
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| T |
28669893 |
agtatctctgtatattggtggattttctttagataacaattcctttattggtcctatcactttttccataccctcatgtgagtaatcatgttgtgttcta |
28669992 |
T |
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| Q |
212 |
aaaaaggttgcaactgaaattcttgggcctgcatggtttgctaaaactctgtgttgaacacttttgaacttgtcattactcacaagctggagaaagaaaa |
311 |
Q |
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| T |
28669993 |
aaaaaggttgcaactgaaattcttgggcctgcatggtttgctaaaactctgtgttgaacacttgtgaacttgtcattactcacaagctggagaaagaaaa |
28670092 |
T |
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| Q |
312 |
at |
313 |
Q |
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| T |
28670093 |
at |
28670094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 39 - 311
Target Start/End: Original strand, 28647715 - 28647987
Alignment:
| Q |
39 |
acaacttgaagggtgatagtgcagaagctccaaggccgtttgcaaaacgatatgccaaatactctttcaaagaagtatctctgtatattggtgaattttc |
138 |
Q |
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| T |
28647715 |
acaacttgaaaggtgatagtgcagaagctccaaacccgcttgccaaacgatatttcaagtactctttcaaagatgtatctttgtatattggagggttttc |
28647814 |
T |
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| Q |
139 |
tttagataacagttcctttattggtcctatcactttttccataccctcatgtgagtaatcatgttgtgttctaaaaaaggttgcaactgaaattcttggg |
238 |
Q |
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| T |
28647815 |
tttagataaaagttccttgattggtccaatcacttttggtatgccctcaggagaatgatcatgttgtgttctaaaaaaggttgcaactgaaattcttggg |
28647914 |
T |
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| Q |
239 |
cctgcatggtttgctaaaactctgtgttgaacacttttgaacttgtcattactcacaagctggagaaagaaaa |
311 |
Q |
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| T |
28647915 |
cctgcatggtttgctaaaactctgtgttgaacacttctgtacttgtcattactcacaagctgtaaaaagaaaa |
28647987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 39 - 311
Target Start/End: Original strand, 28638973 - 28639245
Alignment:
| Q |
39 |
acaacttgaagggtgatagtgcagaagctccaaggccgtttgcaaaacgatatgccaaatactctttcaaagaagtatctctgtatattggtgaattttc |
138 |
Q |
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| T |
28638973 |
acaacttgaaaggggatagtgcagaagctccaaaaccgcttgccaaacgatatttcaagtactctttcaaagaagtgtctttgtatattggtgggttttc |
28639072 |
T |
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| Q |
139 |
tttagataacagttcctttattggtcctatcactttttccataccctcatgtgagtaatcatgttgtgttctaaaaaaggttgcaactgaaattcttggg |
238 |
Q |
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| T |
28639073 |
ttcagataaaagttccttgattggtccaatcaattttggtatgccctcaggagagtgatcatgttgtgttctaaagagggttgcaactgaaattcttgga |
28639172 |
T |
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| Q |
239 |
cctgcatggtttgctaaaactctgtgttgaacacttttgaacttgtcattactcacaagctggagaaagaaaa |
311 |
Q |
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| T |
28639173 |
cctgcatgttttgctaaaactctgtgttgaacacttttaaacttgtcattactcacaagctgcagaaagaaaa |
28639245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 56 - 312
Target Start/End: Original strand, 28672910 - 28673157
Alignment:
| Q |
56 |
agtgcagaagctccaaggccgtttgcaaaacgatatgccaaatactctttcaaagaagtatctctgtatattggtgaattttctttagataacagttcct |
155 |
Q |
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| T |
28672910 |
agtgcagaaaatccaatgccgtttgtaaaacgatgtgccaagaactctttcaaagaagtgtctctatatattggtagattttctttagataacagttcct |
28673009 |
T |
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| Q |
156 |
ttattggtcctatcactttttccataccctcatgtgagtaatcatgttgtgttctaaaaaaggttgcaactgaaattcttgggcctgcatggtttgctaa |
255 |
Q |
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| T |
28673010 |
tgattggaccaatcacttttggcattccctc------ggattcatgt---gctctaaaaagggatgcgattgaaattcttgggccagcatgttttgctaa |
28673100 |
T |
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| Q |
256 |
aactctgtgttgaacacttttgaacttgtcattactcacaagctggagaaagaaaaa |
312 |
Q |
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| T |
28673101 |
aactctgtgttgaacacttgtgaacttatcattactcacaatctgtagaaagaaaaa |
28673157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 205 - 300
Target Start/End: Original strand, 28690058 - 28690153
Alignment:
| Q |
205 |
tgttctaaaaaaggttgcaactgaaattcttgggcctgcatggtttgctaaaactctgtgttgaacacttttgaacttgtcattactcacaagctg |
300 |
Q |
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| T |
28690058 |
tgttctaaacaatgatgctactgaaattcttggacctatatgctttgctaaaactctgtgttgaacgctaatgaacttgtcattagttacaagctg |
28690153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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