View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11592_high_1 (Length: 1256)
Name: NF11592_high_1
Description: NF11592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11592_high_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 1056; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 1056; E-Value: 0
Query Start/End: Original strand, 52 - 1247
Target Start/End: Complemental strand, 44145508 - 44144307
Alignment:
| Q |
52 |
agaagaagccaagacctttggaaggaagtgtggagagccactgtacttaatagtgtgacgaatttcctttagataccagacatgaatatcttcccgagtc |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44145508 |
agaagaagccaagacctttggaaggaagtgtggagagccactgtacttaatagtgtgacgaatttcctttagataccagacatgaatatcttcccgagtc |
44145409 |
T |
|
| Q |
152 |
ctgaccgaattaatctagcaagaaagggtgtaaaactggaaacactctgtccaaatgtggctactccattactctacctgtacagaggctgaaaattaat |
251 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44145408 |
ctgactgaattaatctagcaagaaagggtgtaaaactggaaacactctgtccaaatgtggctactccattactctacctgtacagaggctgaaaattaat |
44145309 |
T |
|
| Q |
252 |
gttggtgtcggttgttttgaatgttgtactggttatggctttctagtgcgcagttatgcaggttctgtggccttcgcagctacaaggaaggaagagatta |
351 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
44145308 |
gttggtgttggttgttttgaatgttgtactggttatggctttctagtgcgcagttatgcaggttctgtggccttcgcagctacaaggaaggaagatatta |
44145209 |
T |
|
| Q |
352 |
cactatctcctctgatggctgaatctctggccttgatatggtgtttgcaacgggttcagatgcaagatttccacaatttgatcattgactcggacgcaga |
451 |
Q |
| |
|
|||||||||||||||||| |||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
44145208 |
cactatctcctctgatggttgaatccctagccttgatatggtgtttgcaacgggtttagatgcaagatttccacaatttgatcattgactcagacgcaga |
44145109 |
T |
|
| Q |
452 |
aactttaacacacggcttgggtagccaggtgaaagcatgctgacattgaccatataattctggactgtaaagaaatactgcagcacatgaattctaggac |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44145108 |
aactttaacacacggcttgggtagccaggtgaaagcatgctgacattgaccatataattctggactgtaaagaaatactgcagcacatgaattctaggac |
44145009 |
T |
|
| Q |
552 |
tttggttttaaaatggtccagaccctgccatgaattgtatttgttatgacttattatgtctctaatgaaaatcttgtttacatgttaaaaagattaaaat |
651 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||| |||||||| |
|
|
| T |
44145008 |
tttggttgtaaaatggtccagaccttgccatgaattgcatttgttatgacttattatttctctaatgaaaatcttattttcatgtcaaaaaaattaaaat |
44144909 |
T |
|
| Q |
652 |
aatcctcctattcgaaacttgcaagtgagtctaaatttgattgcaatttttgacaataaaacacctgatattatatttgtttatttacga----nnnnnn |
747 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44144908 |
aatcctcctattcgaaacttgcaagtgagtctaaatttgattgcattttttgacaataaaacacctgatattatatttgtttatttacgatttttttttt |
44144809 |
T |
|
| Q |
748 |
nnnnattgaaacatgtctaagatagtatgctttctaagaataccatgtcagcattgttttttaattttactaatcaacaataggttcagtattatcttac |
847 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44144808 |
ttttattgaaacatgtctaagatagtatgctttctaagaataccatgtcagcattgttttttaattttactaatcaacaatagattcagtattatcttac |
44144709 |
T |
|
| Q |
848 |
cctttttgaaggtgtacactaccaccaccttactcttgtatttaggtgtttgtctagagttatattagtaccaccatactatttattgtttctaccattt |
947 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44144708 |
cctttttgaaggtgtacactaccaccaccttactcttgtatttaggtgtttgtctagagttatattagtaccaccatactatttattgtttctaccattt |
44144609 |
T |
|
| Q |
948 |
tcatttcattgtaggatgagtcaacagaaaccatatactagcagcacggttatcaacataaatacaatcttagaagggcataacaaattgacaatattga |
1047 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44144608 |
tcatttcattgtaggatgagtcaacagaaaccatatactagcagcatggttatcaacataaatacaatcttagaagggcataacagattgacaatattga |
44144509 |
T |
|
| Q |
1048 |
agaaggttccggccaattcaagtaactatgatcatcaatttaaacacaaattcccttccctcaattgtgtcagtgcttgatttttgagctcatattattg |
1147 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44144508 |
agaaggttccggccaattcaagtaactatgatcatcaatttaatcacaaattcccttccctcaattgtgtcagtgcttgatttttgagctcatattattg |
44144409 |
T |
|
| Q |
1148 |
ttgtt--tgtgtgaataacacatgttaggttgagagtggatggaaagcattgcacaatcaccatagtaagaatatttacatatacaagtttggtctgtgc |
1245 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44144408 |
ttgtttgtgtgtgaataacacatgttaggttgagagtgtatggaaagcattgcacaatcaccatagtaagaatatttacatatacaagtttggtctgtgc |
44144309 |
T |
|
| Q |
1246 |
tg |
1247 |
Q |
| |
|
|| |
|
|
| T |
44144308 |
tg |
44144307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 9e-95
Query Start/End: Original strand, 1046 - 1247
Target Start/End: Complemental strand, 40893023 - 40892820
Alignment:
| Q |
1046 |
gaagaaggttccggccaattcaagtaactatgatcatcaatttaaacacaaattcccttccctcaattgtgtcagtgcttgatttttgagctcatattat |
1145 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
40893023 |
gaagaaggttccggccaattcaagcgactatgatcatcaatttaaacacaaattcccttccctcaattgtgtcagtgcttaattttttagctcatattat |
40892924 |
T |
|
| Q |
1146 |
tgttgtttg--tgtgaataacacatgttaggttgagagtggatggaaagcattgcacaatcaccatagtaagaatatttacatatacaagtttggtctgt |
1243 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40892923 |
tgttgtttgtgtgtgaataacacatgttaggttgagagtggatggaaagcattgcacaatcaccatagtaagaatatttacatatacaagtttggtctgt |
40892824 |
T |
|
| Q |
1244 |
gctg |
1247 |
Q |
| |
|
|||| |
|
|
| T |
40892823 |
gctg |
40892820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 8e-49
Query Start/End: Original strand, 52 - 205
Target Start/End: Original strand, 44156464 - 44156610
Alignment:
| Q |
52 |
agaagaagccaagacctttggaaggaagtgtggagagccactgtacttaatagtgtgacgaatttcctttagataccagacatgaatatcttcccgagtc |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
44156464 |
agaagaagccaagacctttggaaggaagtgtggagagccactgtacttaatagtgtgacgaatttcctttagataccagacataaatatattccc----- |
44156558 |
T |
|
| Q |
152 |
ctgaccgaattaatctagcaagaaagggtgtaaaactggaaacactctgtccaa |
205 |
Q |
| |
|
|||| ||||||||||| |||||||| ||||||| |||||||||| ||||||| |
|
|
| T |
44156559 |
--gaccaaattaatctagaaagaaaggttgtaaaattggaaacactttgtccaa |
44156610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 934 - 1023
Target Start/End: Complemental strand, 40893106 - 40893020
Alignment:
| Q |
934 |
tgtttctaccattttcatttcattgtaggatgagtcaacagaaaccatatactagcagcacggttatcaacataaatacaatcttagaag |
1023 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
40893106 |
tgtttgtaccattttcatttcattgtaggatgagtcaacagaaaccatatact---agcatggttatcaacataaatacaatcttagaag |
40893020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 224 - 530
Target Start/End: Original strand, 44158099 - 44158411
Alignment:
| Q |
224 |
tctacctgtacagaggctgaaaattaatgttggtgtcggttgttttgaatgttgtactggttatggctttctagtgcgcagttatgcaggttctgtggcc |
323 |
Q |
| |
|
|||||||||||| |||||||||| ||||| || || | ||||||||||| ||||||||||||||| ||| | ||||||| | || |||| ||||| || |
|
|
| T |
44158099 |
tctacctgtacataggctgaaaactaatgctgatgctgattgttttgaatattgtactggttatggttttgt-gtgcgcaactttgtaggtcctgtgacc |
44158197 |
T |
|
| Q |
324 |
ttc-gcagctacaaggaaggaa--ga---gattacactatctcctctgatggctgaatctctggccttgatatggtgtttgcaacgggttcagatgcaag |
417 |
Q |
| |
|
|| || ||||||||||||||| || ||| || |||||||| ||||||||||| | |||||||||| | |||||||||||| |||||| ||| |
|
|
| T |
44158198 |
ttttgcggctacaaggaaggaaacgaaacgatcgcaatatctcctttgatggctgaagcactggccttgacacggtgtttgcaacatgttcagcaacaaa |
44158297 |
T |
|
| Q |
418 |
atttccacaatttgatcattgactcggacgcagaaactttaacacacggcttgggtagccaggtgaaagcatgctgacattgaccatata--attctgga |
515 |
Q |
| |
|
| || ||||||||||||||||| |||| | |||| | ||| |||| |||| ||| | || ||| ||||||||||||||||| ||| || |||||||| |
|
|
| T |
44158298 |
aatttcacaatttgatcattgagacggatgttgaaattgtaaaacactgctttggtggacaagtg-aagcatgctgacattgatcatttaatattctgga |
44158396 |
T |
|
| Q |
516 |
ctgtaaagaaatact |
530 |
Q |
| |
|
|| ||| |||||||| |
|
|
| T |
44158397 |
ctttaaggaaatact |
44158411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 850 - 900
Target Start/End: Complemental strand, 40893150 - 40893100
Alignment:
| Q |
850 |
tttttgaaggtgtacactaccaccaccttactcttgtatttaggtgtttgt |
900 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40893150 |
tttttgaagaggtacactaccaccaccttactcttgtatttaggtgtttgt |
40893100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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