View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11592_high_10 (Length: 500)
Name: NF11592_high_10
Description: NF11592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11592_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 7 - 491
Target Start/End: Original strand, 14990343 - 14990829
Alignment:
| Q |
7 |
atttgttgagttgagagtttagccaattaagtttcaaaatctttgtcatctgtgtaatgtagtggacacatattttacctctccaactttgatttattta |
106 |
Q |
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| T |
14990343 |
atttgttgagttgagagtttagccaattaagtttcaaaatctttgtcatctgtgtaatgtagtggacacatattttacctctccaactttgatttattta |
14990442 |
T |
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| Q |
107 |
tgtatctgatgtatcggaaatctgatgattttgtgtgttttgactaaaggaaaattggagagaacatctgtcttgaaggctatatgtgctggatttaagg |
206 |
Q |
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| T |
14990443 |
tgtatctgatgtatcggaaatctgatgattttgtgtgttttgactaaaggaaaattggagagaacatctgtcttgaaggctatatgtgctggatttaagg |
14990542 |
T |
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| Q |
207 |
agactactgagcctcaagtctgtttaagtggaggttggtcagcaagtctgtttaatttt--acattatatgaactctgctaatgacagattctttcagtt |
304 |
Q |
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| T |
14990543 |
agactactgagcctcaagtctgtttaagtggaggttggtcaccaagtctgtttaattttacacattatatgaactctgctaatgacagattctttcagtt |
14990642 |
T |
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| Q |
305 |
caaaacatggttatcaaattgtgaatcgaatttcctattttaagcatcgtgaattgaatcttattatgaaatgaattgtatatacattacagatgaaaat |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14990643 |
caaaacatggttatcaaattgtgaatcgaatttcctattttaagcatcgtgaattgaatcttattatgaaatgaattgtatatacattacagatgaaaat |
14990742 |
T |
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| Q |
405 |
aagttttttacgtaaaagtaagtggcatagcgaaattgtaagctagtgcgtaatatttgtacctcaacaattcagtagtcaagtcat |
491 |
Q |
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| T |
14990743 |
aagatttttacgtaaaagtaagtggcatagcgaaattgtaagctagtgcgtaatatttgtacctcaacaattcaatagtcaagtcat |
14990829 |
T |
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