View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11592_high_11 (Length: 477)
Name: NF11592_high_11
Description: NF11592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11592_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 14 - 421
Target Start/End: Original strand, 8133794 - 8134202
Alignment:
| Q |
14 |
agatacaatttgttacatttctttgaaattaagattaaaatcaaaatcttaaacnnnnnnntataggagataatggcaggttcatcagaagagggacaag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8133794 |
agatacaatttgttacatttctttgaaattaagattaaaatcaaaatcttaaacaaaaaaatataagagataatggcaggttcatcagaagagggacaag |
8133893 |
T |
|
| Q |
114 |
taattggcgttcacaacgttgatgcatggaacgatatcctccataggggcaatgaatccaagaaactggtatattattagtaccttttaattatacatca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8133894 |
taattggcgttcacaacgttgatgcatggaacgatatcctccataggggcaatgaatccaagaaactggtatattattagtaccttttaattatacatca |
8133993 |
T |
|
| Q |
214 |
aactattttttgtttattcttattttgccttcaaaatattgatcttaatttatggcttttatttgtgaacgtgacatgatta-nnnnnnnnnnnnnnnnn |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8133994 |
aactattttttgtttattcttattttgccttcaaaatattgatcttaatttatggcttttatttgtgaacgtgacatgattattttttttcctttttgtt |
8134093 |
T |
|
| Q |
313 |
nngttacataatgcatctgttattgaaatattgatgtgaaaaagaatttctatggatttgattattgttggttattattctcatgcgatcatgattatgt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8134094 |
ttgttacataatgcatctgttattgaaatattgatgtgaaaaagaatttctatggatttgattattgttggttattattctcatgcgatcatgattatat |
8134193 |
T |
|
| Q |
413 |
acattattc |
421 |
Q |
| |
|
||||||||| |
|
|
| T |
8134194 |
acattattc |
8134202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University