View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11592_high_2 (Length: 852)
Name: NF11592_high_2
Description: NF11592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11592_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 754; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 754; E-Value: 0
Query Start/End: Original strand, 17 - 841
Target Start/End: Complemental strand, 9574696 - 9573872
Alignment:
| Q |
17 |
agttgcttggaaccaagttaggattgacggtctcttacattcaacagatgatcttgcaaaattgtattctgaagttcatatattgaagtccttaagacat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9574696 |
agttgcttggaaccaagttaggattgacggtctcttacattcaacagatgatcttgcaaaattgtattctgaagttcatatattgaagtccttaagacat |
9574597 |
T |
|
| Q |
117 |
gaaaatatcattaagttctatgattcctgggtcgatgataagcagaaaaccgttaacatgatcaccgaactcttcacatctggaaacttaagacagtatg |
216 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9574596 |
gaaaatatcattaagttctacgattcctgggtcgatgataagcagaaaaccgttaacatgatcaccgaactcttcacatctggaaacttaagacagtatg |
9574497 |
T |
|
| Q |
217 |
ttctctcgattttaacccnnnnnnnnatgccatttcgctgcaatgtgcacatgagactcttgtgaaactttggcttacaggtaccgtaagaagcataagt |
316 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9574496 |
ttctctcgattttaacccttttttttatgccatttcgctgcattgtgcacatgagactcttgtgaaactttggcttacaggtaccgtaagaagcataagt |
9574397 |
T |
|
| Q |
317 |
atgttgaaatgaaagccataaaaggttgggccaggcagattcttcaaggcttagcatatcttcacggtcacaggccgcctattattcatagagacttgaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9574396 |
atgttgaaatgaaagccataaaaggttgggccaggcagattcttcaaggcttagcatatcttcacggtcacaggccgcctattattcatagagacttgaa |
9574297 |
T |
|
| Q |
417 |
atgcgacaacatctttgtgaacggaaaccaaggagaagttaagatcggtgatctcggattggcaatcgtcatgcagcagccaacagctcggagtgttatt |
516 |
Q |
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| T |
9574296 |
atgcgacaacatctttgtgaacggaaaccaaggagaagttaagatcggtgatctcggattggcaatcgtcatgcagcagccaacagctcggagtgttatt |
9574197 |
T |
|
| Q |
517 |
ggtaacacattttcgtttcctaaaatgtgaaggnnnnnnnnnatcacattggttctgtgaacaacactcaaatattcttctggttttttcgtatctctat |
616 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9574196 |
ggtaacacattttcgtttcctaaaatgtgaaggtttttttttatcacattggttctgtgaacaacactcaaatattcttctgtttttttcgtatctctat |
9574097 |
T |
|
| Q |
617 |
ttttaaaagggacgcccgagtttatggctccagaattatatgaagaggagtacaatgaacttgttgacatctattcttttggaatgtcaatgttggagat |
716 |
Q |
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| T |
9574096 |
ttttaaaagggacgcccgagtttatggctccagaattatatgaagaggagtacaatgaacttgttgacatctattcttttggaatgtcaatgttggagat |
9573997 |
T |
|
| Q |
717 |
ggttactcttgagtatccctacaacgaatgcaataacccagctcaaatatataagaaagttacctcggtaagtatgacaatcatcggcatatcattatca |
816 |
Q |
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| T |
9573996 |
ggttactcttgagtatccctacaatgaatgcaataacccagctcaaatatataagaaagttacctcggtaagtatgacaatcatcggcatatcattatca |
9573897 |
T |
|
| Q |
817 |
attatgattgtattcatctgtgctg |
841 |
Q |
| |
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||||| ||||||||||||||||||| |
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| T |
9573896 |
attattattgtattcatctgtgctg |
9573872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 634 - 788
Target Start/End: Complemental strand, 27092445 - 27092291
Alignment:
| Q |
634 |
gagtttatggctccagaattatatgaagaggagtacaatgaacttgttgacatctattcttttggaatgtcaatgttggagatggttactcttgagtatc |
733 |
Q |
| |
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||||| ||||| |||||||| || |||||| | ||||||||||| || || || ||||| | ||| |||| ||| | |||||| |||||||||||| || |
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| T |
27092445 |
gagttcatggcaccagaattgtacgaagagaaatacaatgaactagtagatatatattcctatgggatgtgtatgatagagatgcttactcttgagtttc |
27092346 |
T |
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| Q |
734 |
cctacaacgaatgcaataacccagctcaaatatataagaaagttacctcggtaag |
788 |
Q |
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| T |
27092345 |
catacaatgagtgctccaacccagctcaaatatacaagaaagtaaccgcggtaag |
27092291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 634 - 788
Target Start/End: Original strand, 27185856 - 27186010
Alignment:
| Q |
634 |
gagtttatggctccagaattatatgaagaggagtacaatgaacttgttgacatctattcttttggaatgtcaatgttggagatggttactcttgagtatc |
733 |
Q |
| |
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||||| ||||| |||||||| || |||||| | ||||||||||| || || || ||||| | ||| |||| ||| | |||||| |||||||||||| || |
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| T |
27185856 |
gagttcatggcaccagaattgtacgaagagaaatacaatgaactagtagatatatattcctatgggatgtgtatgatagagatgcttactcttgagtttc |
27185955 |
T |
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| Q |
734 |
cctacaacgaatgcaataacccagctcaaatatataagaaagttacctcggtaag |
788 |
Q |
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| T |
27185956 |
catacaatgagtgctccaacccagctcaaatatacaagaaagtaaccgcggtaag |
27186010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 634 - 719
Target Start/End: Complemental strand, 47005544 - 47005459
Alignment:
| Q |
634 |
gagtttatggctccagaattatatgaagaggagtacaatgaacttgttgacatctattcttttggaatgtcaatgttggagatggt |
719 |
Q |
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| T |
47005544 |
gagtttatggcaccagaagtgtatgaagaggattacaatgaattggttgacatatactcttttggaatgtgcattttggagatggt |
47005459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 634 - 703
Target Start/End: Original strand, 34452137 - 34452206
Alignment:
| Q |
634 |
gagtttatggctccagaattatatgaagaggagtacaatgaacttgttgacatctattcttttggaatgt |
703 |
Q |
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||||||||||| |||||| | || |||||||||||||| || ||||||||||| ||| ||||||| |||| |
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| T |
34452137 |
gagtttatggccccagaactttacgaagaggagtacaacgagcttgttgacatatatgcttttggcatgt |
34452206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 452 - 520
Target Start/End: Complemental strand, 36630393 - 36630325
Alignment:
| Q |
452 |
aagttaagatcggtgatctcggattggcaatcgtcatgcagcagccaacagctcggagtgttattggta |
520 |
Q |
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| T |
36630393 |
aagttaagattggagatctaggattggcaattgtcatgcagcaacctactgcccggagtgtcattggta |
36630325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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