View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11592_high_20 (Length: 272)
Name: NF11592_high_20
Description: NF11592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11592_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 26 - 257
Target Start/End: Original strand, 55506074 - 55506305
Alignment:
| Q |
26 |
ttctaagaggaggacggaagagtgatagaaagatgaatggaggaagattttctattttaaccaagctttcccctccatatacctctctttttctgttgtt |
125 |
Q |
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| T |
55506074 |
ttctaagaggaggacggaagagtgatagaaagatgaatggaggaagattttctattttaaccaagctttcccctccatacacctctctttttctgttgtc |
55506173 |
T |
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| Q |
126 |
gcaaactggccattaaagttgaactccttgagctgtaatttttcataattagttctgagaagttctcattttattgcagaaaatggtgcttccttgcacg |
225 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| ||| |
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| T |
55506174 |
gcaaactggccattaaagttgaactccttgagctgtactttttcatatttagttctgagaagttctcattttattgcagataatggcgcttccttggacg |
55506273 |
T |
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| Q |
226 |
cgtctacatcctcttcaatgccatgtgtttct |
257 |
Q |
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| T |
55506274 |
cgtctacatcctcttcaatgccctgtgtttct |
55506305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 247
Target Start/End: Original strand, 49087235 - 49087355
Alignment:
| Q |
127 |
caaactggccattaaagttgaactccttgagctgtaatttttcataattagttctgagaagttctcattttattgcagaaaatggtgcttccttgcacgc |
226 |
Q |
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| T |
49087235 |
caaacaggccattaaagttgagctcgttcagctgcactttttcatcttcagttctgagaggttctcattttattgcagataatggcgcgtcatttcaacc |
49087334 |
T |
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| Q |
227 |
gtctacatcctcttcaatgcc |
247 |
Q |
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||||| ||| ||||||||||| |
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| T |
49087335 |
gtctatatcttcttcaatgcc |
49087355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 34
Target Start/End: Complemental strand, 55504047 - 55504016
Alignment:
| Q |
3 |
aacattttggttgcacgtgttccttctaagag |
34 |
Q |
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| T |
55504047 |
aacattttggttgcacgtgttccttctaagag |
55504016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 43633733 - 43633670
Alignment:
| Q |
26 |
ttctaagaggaggacggaagagtgatagaaagatgaatggaggaagattttctattttaaccaa |
89 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43633733 |
ttctaagagggggacggaagagtgatagaaagatgaatggaggaagcttttctattttaaccaa |
43633670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 43996194 - 43996257
Alignment:
| Q |
26 |
ttctaagaggaggacggaagagtgatagaaagatgaatggaggaagattttctattttaaccaa |
89 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43996194 |
ttctaagagggggacggaagagtgatagaaagatgaatggaggaagcttttctattttaaccaa |
43996257 |
T |
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