View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11592_high_25 (Length: 239)
Name: NF11592_high_25
Description: NF11592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11592_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 36294142 - 36294364
Alignment:
| Q |
1 |
gtgtttccaatactagctgtaaatacaatggattctgttttgaccaacaaggttttgtgaactataggtttcaagtgaagaagctatagaaactgctaag |
100 |
Q |
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| T |
36294142 |
gtgtttccaatactagctgtaaatacaatggattctgttttgaccaacaaggttttgtgaactataggtttcaagtgaagaagctatagaaactgctaag |
36294241 |
T |
|
| Q |
101 |
ctgcttgctttgaaagaaggtttactggtatgacatatgataacttgtgattcttgttattggctttgcattaatttcccttcagttatttgttatataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36294242 |
ctgcttgctttgaaagaaggtttactggtatgacatatgataacttgtgattcttgttattggctttgcattaatttcccttcagttatttgttatataa |
36294341 |
T |
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| Q |
201 |
aaactctgcaaatatgtaaccac |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
36294342 |
aaactctgcaaatatgtaaccac |
36294364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 2 - 215
Target Start/End: Original strand, 36288557 - 36288771
Alignment:
| Q |
2 |
tgtttccaatactagctgtaaatacaatggattctgttttgaccaacaaggttttgtgaactataggtttcaagtgaagaagctatagaaactgctaagc |
101 |
Q |
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| T |
36288557 |
tgtttccaatactagctgcaaatataagggattctgttttgaccaacaaggttctgtgaattacaggtttcaagtgaagaagctatagaaactgctaagc |
36288656 |
T |
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| Q |
102 |
tgcttgctttgaaagaaggtttactggtatgacat--atgataacttgtgattcttgttattggctttgcattaatttcccttcagttatttgttatata |
199 |
Q |
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||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| |||||| ||||||||| | |||||||| |
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| T |
36288657 |
tgcttgccttgaaagaaggtttactggtatggcatgactgataacttgtgattcttgttattgactttgcagtaattttccttcagttttgtgttatat- |
36288755 |
T |
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| Q |
200 |
aaaactctgcaaatat |
215 |
Q |
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|||||| ||||||||| |
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| T |
36288756 |
aaaactatgcaaatat |
36288771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 36283242 - 36283453
Alignment:
| Q |
1 |
gtgtttccaatactagctgtaaatacaatggattctgttttgaccaacaaggttttgtgaactataggtttcaagtgaagaagctatagaaactgctaag |
100 |
Q |
| |
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|||||||||||||| |||| ||||||| ||||| |||||||||||||||||| |||||| || |||||||| |||||||||||||||||||||||||| |
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| T |
36283242 |
gtgtttccaatactggctgctaatacaagggatt--gttttgaccaacaaggttctgtgaattacaggtttcaggtgaagaagctatagaaactgctaag |
36283339 |
T |
|
| Q |
101 |
ctgcttgctttgaaagaaggtttactggtatgacatatgataacttgtgattcttgttattggctttgcattaatttcccttcagttatttgttatataa |
200 |
Q |
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|||||||| | ||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||| |||||| ||||||||| |||||||||||| |
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| T |
36283340 |
ctgcttgcctcgaaagaaggtttactggtatggc--atgataacttgtgattcttcttattggctttgcaataattttccttcagttttttgttatataa |
36283437 |
T |
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| Q |
201 |
aaactctgcaaatatg |
216 |
Q |
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|||||||||||||||| |
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| T |
36283438 |
aaactctgcaaatatg |
36283453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 36278509 - 36278562
Alignment:
| Q |
77 |
gaagaagctatagaaactgctaagctgcttgctttgaaagaaggtttactggta |
130 |
Q |
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| T |
36278509 |
gaagaagctattgaaactgctaaacttcttgcattaaaagaaggtttgctggta |
36278562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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