View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11592_high_27 (Length: 216)
Name: NF11592_high_27
Description: NF11592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11592_high_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 32902139 - 32902336
Alignment:
| Q |
1 |
taaaaccctttcaatcgttctctgattctctcctcttccaaaactgttattctctccacatttcacagcaagattgatctttctagcaagatttcgaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32902139 |
taaaaccctttcaatcgttctctgattctctcctcttccaaaactgttattctctccaaatttcacagcaagattgatctttctagcaagatttcgaagc |
32902238 |
T |
|
| Q |
101 |
aattttgaaacaagcaaggttagaaaattgtgctcttaattcatttatgattattttccctcatttcatttcaattcatgactttggttatttctgtg |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32902239 |
aattttgaaacaagcaaggttagaaaattgtgctcttaattcatttatgattattttccctcatttcatttcaattcatgagtttggttatttctgtg |
32902336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 86 - 173
Target Start/End: Complemental strand, 9142168 - 9142083
Alignment:
| Q |
86 |
gcaagatttcgaagcaattttgaaacaagcaaggttagaaaattgtgctcttaattcatttatgattattttccctcatttcatttca |
173 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||| |||| ||||||||||| | ||||||||||||||| |||| |
|
|
| T |
9142168 |
gcaagatttgaaagcaattttgaaacaaggaaggttagaaaattgtgttcttgattcatttatg--ttttttccctcatttcaattca |
9142083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 36012519 - 36012577
Alignment:
| Q |
86 |
gcaagatttcgaagcaattttgaaacaagcaaggttagaaaattgtgctcttaattcat |
144 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| | |||| |||||| |
|
|
| T |
36012519 |
gcaagatttcaaagcaattttgaaacaagcaaggttagaaaattgggttcttgattcat |
36012577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 55678989 - 55679027
Alignment:
| Q |
94 |
tcgaagcaattttgaaacaagcaaggttagaaaattgtg |
132 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
55678989 |
tcgaagcaattttgaaacaaacaaggttagaaaattgtg |
55679027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 50743809 - 50743847
Alignment:
| Q |
94 |
tcgaagcaattttgaaacaagcaaggttagaaaattgtg |
132 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
50743809 |
tcgaagcaattttgaaacaaccaagattagaaaattgtg |
50743847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 3119220 - 3119175
Alignment:
| Q |
85 |
agcaagatttcgaagcaattttgaaacaagcaaggttagaaaattg |
130 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3119220 |
agcaagatttcatagcaattttgaaacaagcaaggttagaaaattg |
3119175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 3585669 - 3585746
Alignment:
| Q |
27 |
tctctcctcttccaaaactgttattct---ctccacatttcacagcaagattgatc--tttctagcaagatttcgaag |
99 |
Q |
| |
|
|||||| ||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
3585669 |
tctctcttcttccaaaactgttgttcttctctccacatttcacagcaagattgatccttttctagcaagtattcgaag |
3585746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 33420920 - 33420956
Alignment:
| Q |
96 |
gaagcaattttgaaacaagcaaggttagaaaattgtg |
132 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33420920 |
gaagcaattttgaaacaaccaaggttagaaaattgtg |
33420956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 34011772 - 34011810
Alignment:
| Q |
94 |
tcgaagcaattttgaaacaagcaaggttagaaaattgtg |
132 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
34011772 |
tcgaatcaattttgaaacaaacaaggttagaaaattgtg |
34011810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University