View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11592_high_29 (Length: 212)
Name: NF11592_high_29
Description: NF11592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11592_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 35686413 - 35686239
Alignment:
| Q |
17 |
gaagaacatttgcagagtggagatatttgagacctaggagtagctaaaataagagtttatgattagtaacaatcacaaggatatgtaaagtaagcaaata |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35686413 |
gaagaacatttgcagagtggagatatttgagacctaggagtagctaaaataagagtttatgattagtaacaatcacaaggatatgtaaagtaagcaaata |
35686314 |
T |
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| Q |
117 |
tttgaaatatcataacaagactaattagtacccgaaac--aaaatatctgcaaatatcattagaaagtgactgag |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35686313 |
tttgaaatatcataacaagactaattagtacccgaaacaaaaaatatctgcaaatatcattagaaagtgactgag |
35686239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 23669168 - 23669268
Alignment:
| Q |
17 |
gaagaacatttgcagagtggagatatttgagacctaggagtagctaaaataagagtttatgattagtaacaatcacaaggatatgtaaagtaagcaaata |
116 |
Q |
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|||||| ||||||||| |||||||| || |||||| | |||| || |||||||||||||||||||||||||| |||||||||||| || |||||||||| |
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| T |
23669168 |
gaagaatatttgcagaatggagataattaagaccttgaagtaactgaaataagagtttatgattagtaacaa--acaaggatatgttaaataagcaaata |
23669265 |
T |
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| Q |
117 |
ttt |
119 |
Q |
| |
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||| |
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| T |
23669266 |
ttt |
23669268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 24041444 - 24041544
Alignment:
| Q |
17 |
gaagaacatttgcagagtggagatatttgagacctaggagtagctaaaataagagtttatgattagtaacaatcacaaggatatgtaaagtaagcaaata |
116 |
Q |
| |
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|||||| ||||||||| |||||||| || |||||| | |||| || |||||||||||||||||||||||||| |||||||||||| || |||||||||| |
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| T |
24041444 |
gaagaatatttgcagaatggagataattaagaccttgaagtaactgaaataagagtttatgattagtaacaa--acaaggatatgttaaataagcaaata |
24041541 |
T |
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| Q |
117 |
ttt |
119 |
Q |
| |
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||| |
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|
| T |
24041542 |
ttt |
24041544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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