View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11592_high_6 (Length: 611)
Name: NF11592_high_6
Description: NF11592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11592_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 43516630 - 43516327
Alignment:
| Q |
1 |
agcaagcaagagagaatcgaagagaaagggtgtaaaggaaggaccccacagcagaaaaaggaataaacaggctgtgaaggatgcatttcaccatatgatt |
100 |
Q |
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| T |
43516630 |
agcaagcaagagagaatcgaagagaaagggtgtaaaggaaggaccccacagcacaaaaaggaataaacaggctgtgaaggatgcatttcaccatatgatt |
43516531 |
T |
|
| Q |
101 |
ggtattagtattagtattagtatttgtccacaaacaaagcgagcgagtgagagctagctaggttggtttggtttcagtaataagcacgcagcagatacaa |
200 |
Q |
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| T |
43516530 |
ggtattagtattagtattagtatttgtccacaaacaaagcgagcgagtgagagctag----gttggtttggtttcagtaataagcacgcagcagatacaa |
43516435 |
T |
|
| Q |
201 |
cgagacaaccaacatgagcttcttaccaacaagtagaagtggaaagaaggggtctctccctgtgtcaaccaaaaccaaattaggagatgctgctgatgca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43516434 |
cgagacaaccaacatgagcttcttaccaacaagtagaagtggaaagaaggggtctctccctgtgtcaaccaaaaccaaattaggagatgctgctgatgca |
43516335 |
T |
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| Q |
301 |
gtcgcagc |
308 |
Q |
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|||||||| |
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| T |
43516334 |
gtcgcagc |
43516327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 333 - 596
Target Start/End: Complemental strand, 43516317 - 43516054
Alignment:
| Q |
333 |
ctttattcgcagacgcctatcaacatcctccctcaacaacaacacccctacagaaacaactaataataaatggtcgtcatttattcccagatccaagtcc |
432 |
Q |
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| T |
43516317 |
ctttattcgcagacgcctatcaacatcctccctcaaaaacaacacctctacagaaacaactaataataaatggtcgtcatttattcccagatccaagtcc |
43516218 |
T |
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| Q |
433 |
ctctcattctcatccattggtgactctatcagaaattggtggacctggagctgggcctggatcctctcaaggaagcctatctttgccacagatcttgaaa |
532 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43516217 |
ctctcattctcatccattggtgactctatcagaaattggtggacctggagctgggcctggatcctctcaaggaagcctatctttgccacagatcttgaaa |
43516118 |
T |
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| Q |
533 |
tgaatgagcaagaaaccaagttgctcacttcccgtgataaggggagttggaaacatgttatttg |
596 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43516117 |
tgaatgagcaagaaaccaagttgctcacttcccgtgataaggggagttggaaacatgttatttg |
43516054 |
T |
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