View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11592_high_7 (Length: 585)
Name: NF11592_high_7
Description: NF11592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11592_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 32902313 - 32902592
Alignment:
| Q |
1 |
ttcatgactttggttatttctgtgttctggattcgtataccatattttgaacggaaaattgtataccattgttgtgtgttttgagttccatttatgcttt |
100 |
Q |
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| T |
32902313 |
ttcatgagtttggttatttctgtgttctggattcgtataccatattttgaacggaaaattgtataccattgttgtatgttttgagttccatttatgcttt |
32902412 |
T |
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| Q |
101 |
caatttggcatcacatgtttctgcgcattccaatttctacatcgtgggtttttgtgggtgcagaactggtttccccttcataatagagtcaccactctat |
200 |
Q |
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| T |
32902413 |
caatttggcatcacatgtttctgcgcattccaatttctacatcgtgggtttttgtgggtgcagaactggtttccccttcataatagagtcaccactctat |
32902512 |
T |
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| Q |
201 |
tcaataaacttcacaaatattcaacaacactctctaacatttgtgttctcttgtttatacacacgcacacactctctctt |
280 |
Q |
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| T |
32902513 |
tcaataaacttcacaaatattcaacaacactctctaacatttgtgttctcttgtttatacacacgcacacactctctctt |
32902592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 505 - 572
Target Start/End: Original strand, 32903075 - 32903142
Alignment:
| Q |
505 |
ataagaatgttcattctacatataacttggaatagactattgttgtggttattagtattgatgtccat |
572 |
Q |
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| T |
32903075 |
ataagaatgttcattctacatataacttggaatagactattgttgtggttattagtattgatggccat |
32903142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 387 - 448
Target Start/End: Original strand, 32902699 - 32902760
Alignment:
| Q |
387 |
ttccttttattctgcaattctaactgagaatggatggtttaggggatattggtcaaattgtg |
448 |
Q |
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| T |
32902699 |
ttccttttattttgcaattataacagagaatggatggtttaggggatattggtcaaattgtg |
32902760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 55679064 - 55679160
Alignment:
| Q |
66 |
ccattgttgtgtgttttgagttccatttatgctttcaatttggcatcacatgtttctgcgcattccaatttctacatcgtgggtttttgtgggtgcaga |
164 |
Q |
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| T |
55679064 |
ccattgttgtgtgttttgcatttggtttatgctttcaatttggtatg-catgttcctgcgttttccaatttctacatcgtggg-ttttgtgggtgcaga |
55679160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 152
Target Start/End: Original strand, 50743888 - 50743973
Alignment:
| Q |
66 |
ccattgttgtgtgttttgagttccatttatgctttcaatttggcatcacatgtttctgcgcattccaatttctacatcgtgggtttt |
152 |
Q |
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| T |
50743888 |
ccattgttgtgggttttgcgtttgatttatgctttcaatattgtatg-catgttcctgcgttttccaatttctacatcgtgggtttt |
50743973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 29075690 - 29075636
Alignment:
| Q |
170 |
tttccccttcataatagagtcaccactctattcaataaacttcacaaatattcaa |
224 |
Q |
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| T |
29075690 |
tttccccttcacaatatagtcactactctattcactaaactttacaaatattcaa |
29075636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 7863451 - 7863396
Alignment:
| Q |
169 |
gtttccccttcataatagagtcaccactctattcaataaacttcacaaatattcaa |
224 |
Q |
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| T |
7863451 |
gttttcccttcacaatagagtcgctactctattcactaaactttacaaatattcaa |
7863396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 152
Target Start/End: Original strand, 34011847 - 34011932
Alignment:
| Q |
66 |
ccattgttgtgtgttttgagttccatttatgctttcaatttggcatcacatgtttctgcgcattccaatttctacatcgtgggtttt |
152 |
Q |
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| T |
34011847 |
ccattgttgtgtcttttgcgtttgatttatgctttcaatttggtat-gcatgttcctgcgttttccaatttctatatagtgcgtttt |
34011932 |
T |
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