View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11592_low_14 (Length: 394)
Name: NF11592_low_14
Description: NF11592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11592_low_14 |
 | |
|
| [»] scaffold0053 (1 HSPs) |
| | |
|
| [»] scaffold0046 (1 HSPs) |
| | |
|
| [»] scaffold0100 (1 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
| [»] scaffold0040 (1 HSPs) |
| | |
|
| [»] scaffold0241 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
| [»] scaffold0093 (1 HSPs) |
| | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 9015161 - 9015532
Alignment:
| Q |
1 |
ggtttagggtcaaaagctcgactgcattttttatgaagagcctttaggttttgagaaatatccttctcttgaaacgaaaaagatccaggttcaagattct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
9015161 |
ggtttagggtcaaaagctcgactgcattttttatgaagagcctttaggttttgaaaaatatccttatcttgaaacgaaaaagatctaggttcaagattct |
9015260 |
T |
|
| Q |
101 |
ttgaaagaaattgatttggaagatggatcaataaaaaggccaacttacataagttttaaaattggcccaaaacttaaggttcaattagttgcacttttga |
200 |
Q |
| |
|
||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9015261 |
ttggaagaaattgatttgggagatgaatcaataaaaaggccaacttacataagttttaatattggcccaaaacttaaggttcaaatagttgcacttttga |
9015360 |
T |
|
| Q |
201 |
agaagtacaaagactgttttgcttgggattataatgaattgcctggattaagcaggaatgtggtagaattgaagttaacaattcggccagacaagaaacc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9015361 |
agaagtacaaagactgttttgcttgggattataatgaattgcctggattaagcaggaatgtggtagaattgaagttaccaattcggccagacaagaaacc |
9015460 |
T |
|
| Q |
301 |
agtaaaacagctttcaaaaaggtttgcacctcagatcatgtcgaagattaaagaggaaatcgaaagactcct |
372 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9015461 |
agtaaaacagcttccaaaaaggtttgcacctcagatcatgtcgaagattaaagaggaaatcgaaagactcct |
9015532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 44 - 372
Target Start/End: Complemental strand, 16034238 - 16033911
Alignment:
| Q |
44 |
ttaggttttgagaaatatccttctcttgaaacgaaaaagatccaggttcaagattctttgaaagaaattgatttggaagatggatcaataaaaaggccaa |
143 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| ||||||||||| | ||| ||| ||||| | ||||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
16034238 |
ttaggttttgagaaagatccctctcttgaaacaaaaaagatccaagctcaggatcctttggaggaaattgatttggggtatggaacaataaaaaggacaa |
16034139 |
T |
|
| Q |
144 |
cttacataagttttaaaattggcccaaaacttaaggttcaattagttgcacttttgaagaagtacaaagactgttttgcttgggattataatgaattgcc |
243 |
Q |
| |
|
|||||||||||| ||||||||| ||| || ||||||||||| || |||||||| | |||||||||||||||||||| |||||| ||||||||| ||| |
|
|
| T |
16034138 |
cttacataagttctaaaattggtccagaatttaaggttcaaataattgcacttctaaagaagtacaaagactgtttctattgggactataatgaaatgcg |
16034039 |
T |
|
| Q |
244 |
tggattaagcaggaatgtggtagaattgaagttaacaattcggccagacaagaaaccagtaaaacagctttcaaaaaggtttgcacctcagatcatgtcg |
343 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| ||| ||||| | ||||| || |||||||||||||| || ||| ||||||||||||||| |||||||| |
|
|
| T |
16034038 |
tggaataagcagaaatgtggtagaattgaa-ttaccaatttgaccagataaaaaaccagtaaaacattttccaagaaggtttgcacctcaagtcatgtcg |
16033940 |
T |
|
| Q |
344 |
aagattaaagaggaaatcgaaagactcct |
372 |
Q |
| |
|
|||||| ||||||||||| ||||||||| |
|
|
| T |
16033939 |
aagattgaagaggaaatctgaagactcct |
16033911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 27 - 370
Target Start/End: Complemental strand, 13276873 - 13276531
Alignment:
| Q |
27 |
ttttttatgaagagcctttaggttttgagaaatatccttctcttgaaacgaaaaagatccaggttcaagattctttgaaagaaattgatttggaagatgg |
126 |
Q |
| |
|
||||| |||| || |||||||||||||||||| | |||||||||||||| | ||||||||| | |||| || |||| | ||||||||||||| ||||| |
|
|
| T |
13276873 |
tttttgatgatgaacctttaggttttgagaaagacccttctcttgaaaccacaaagatccaagctcaaaatcctttagaggaaattgatttgggggatgg |
13276774 |
T |
|
| Q |
127 |
atcaataaaaaggccaacttacataagttttaaaattggcccaaaactt-aaggttcaattagttgcacttttgaagaagtacaaagactgttttgcttg |
225 |
Q |
| |
|
||| |||||| |||||||||||||||||| |||||||||||| | || ||||||| | ||||||||||| | |||||||||| | ||| ||||||||| |
|
|
| T |
13276773 |
atcgataaaatggccaacttacataagttccaaaattggcccaggagttcaaggttcgaatagttgcacttctaaagaagtacacatacttttttgcttg |
13276674 |
T |
|
| Q |
226 |
ggattataatgaattgcctggattaagcaggaatgtggtagaattgaagttaacaattcggccagacaagaaaccagtaaaacagctttcaaaaaggttt |
325 |
Q |
| |
|
|||||| || ||| || || |||| |||| || |||||||||||||||||| | ||||| ||||| | ||||||||| || | || ||| ||||||| |
|
|
| T |
13276673 |
ggattacaacgaaatgtctcgattgagcataaacgtggtagaattgaagttaccgattcgaccagagacgaaaccagtgaa--aatttgcaagaaggttt |
13276576 |
T |
|
| Q |
326 |
gcacctcagatcatgtcgaagattaaagaggaaatcgaaagactc |
370 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13276575 |
gcacctcacatcatgtctaagattaaagaggaaatcgaaagactc |
13276531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 23 - 372
Target Start/End: Complemental strand, 16164847 - 16164498
Alignment:
| Q |
23 |
tgcattttttatgaagagcctttaggttttgagaaatatccttctcttgaaacgaaaaagatccaggttcaagattctttgaaagaaattgatttggaag |
122 |
Q |
| |
|
||||| ||| |||| || |||||||||||||||||||||| ||| |||||||| ||||||||| ||| || ||| ||||| |||| |||||||| | | |
|
|
| T |
16164847 |
tgcatctttgatgatgaacctttaggttttgagaaatatcattcccttgaaaccaaaaagatcaaggctcgggatcctttggaagagattgatttaggaa |
16164748 |
T |
|
| Q |
123 |
atggatcaataaaaaggccaacttacataagttttaaaattggcccaaaacttaaggttcaattagttgcacttttgaagaagtacaaagactgttttgc |
222 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| || |||||||||| ||||||||||||||| ||||| |
|
|
| T |
16164747 |
atagatcaataaaaaggccaacttacataagttctaaaattggcctcgaatttaaggttcaaataattgcacttttaaagaagtacaaagacatatttgc |
16164648 |
T |
|
| Q |
223 |
ttgggattataatgaattgcctggattaagcaggaatgtggtagaattgaagttaacaattcggccagacaagaaaccagtaaaacagctttcaaaaagg |
322 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||| ||||||| || ||||||| ||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
16164647 |
ttgggattataatgaaatgcctggattaagcaggaatatggtaaaattgaaactaccaattcgaccagacaagaaaccagtaaaacagcttccaagaagg |
16164548 |
T |
|
| Q |
323 |
tttgcacctcagatcatgtcgaagattaaagaggaaatcgaaagactcct |
372 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| ||||||||||||||||| |
|
|
| T |
16164547 |
gttgcacctcagatcatgttgaatattaaagatgaaatcgaaagactcct |
16164498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 200 - 372
Target Start/End: Original strand, 19724039 - 19724211
Alignment:
| Q |
200 |
aagaagtacaaagactgttttgcttgggattataatgaattgcctggattaagcaggaatgtggtagaattgaagttaacaattcggccagacaagaaac |
299 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| |||||| ||||||| || || || ||||| ||||||||||| || ||||||| ||| ||||||||| |
|
|
| T |
19724039 |
aagaaatacaaagactgttttgcttgagattacaatgaaatgcctggtttgagtagaaatgtagtagaattgaaactaccaattcgaccacacaagaaac |
19724138 |
T |
|
| Q |
300 |
cagtaaaacagctttcaaaaaggtttgcacctcagatcatgtcgaagattaaagaggaaatcgaaagactcct |
372 |
Q |
| |
|
|||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19724139 |
cagtaaaacaacttccaagaaggtttgcacctcagatcatgtcgaagattaaagaggaaatcgaaagactcct |
19724211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 310
Target Start/End: Original strand, 18754540 - 18754823
Alignment:
| Q |
27 |
ttttttatgaagagcctttaggttttgagaaatatccttctcttgaaacgaaaaagatccaggttcaagattctttgaaagaaattgatttggaagatgg |
126 |
Q |
| |
|
|||||||||| |||| ||| |||||||||||| ||||| ||||| | ||||||||||| || ||| |||| ||||||||||| | | |||||| |
|
|
| T |
18754540 |
ttttttatgatgagcttttgggttttgagaaagatcctcctctttcgatcaaaaagatccaaacacaggatcctttagaagaaattgatataggagatgg |
18754639 |
T |
|
| Q |
127 |
atcaataaaaaggccaacttacataagttttaaaattggcccaaaacttaaggttcaattagttgcacttttgaagaagtacaaagactgttttgcttgg |
226 |
Q |
| |
|
||| | |||||| |||||||| ||||||| ||||||| || | ||||||| | ||| ||| |||||| || |||| ||||| || ||||||||| |
|
|
| T |
18754640 |
atcgaaaaaaagaccaacttatataagttccaaaattgagcctgagtttaaggtctagttaattgaacttttaaaagagtaaaaagattgatttgcttgg |
18754739 |
T |
|
| Q |
227 |
gattataatgaattgcctggattaagcaggaatgtggtagaattgaagttaacaattcggccagacaagaaaccagtaaaacag |
310 |
Q |
| |
|
||||| |||||| ||||| |||||||||| |||||||||||| ||||| || |||||| | ||||||||||| ||||||||| |
|
|
| T |
18754740 |
gattaaaatgaaatgcctagattaagcagaaatgtggtagaactgaagctaccaattcaactagacaagaaacttgtaaaacag |
18754823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 42 - 323
Target Start/End: Original strand, 18755864 - 18756144
Alignment:
| Q |
42 |
ctttaggttttgagaaatatccttctcttgaaacgaaaaagatccaggttcaagattctttgaaagaaattgatttggaagatggatcaataaaaaggcc |
141 |
Q |
| |
|
|||| |||||||||||| ||||| ||||| | ||||||||||| | || ||| |||| ||||||||||| | | ||||||||| | |||||| || |
|
|
| T |
18755864 |
ctttgggttttgagaaagatcctcctctttcgatcaaaaagatccaagcacaggatcctttagaagaaattgatataggagatggatcgaaaaaaagacc |
18755963 |
T |
|
| Q |
142 |
aacttacataagttttaaaattggcccaaaacttaaggttcaattagttgcacttttgaagaagtacaaagactgttttgcttgggattataatgaattg |
241 |
Q |
| |
|
|||||| ||||||| ||||||| || | |||||||| | ||| ||| |||||| || |||| ||||| ||||||||||||||||| ||| || || |
|
|
| T |
18755964 |
aacttatataagttccaaaattgagcctgag-ttaaggtttagttaattgaacttttaaaagagtaaaaagattgttttgcttgggattaaaataaaatg |
18756062 |
T |
|
| Q |
242 |
cctggattaagcaggaatgtggtagaattgaagttaacaattcggccagacaagaaaccagtaaaacagctttcaaaaaggt |
323 |
Q |
| |
|
||| ||||| ||| |||||||||||| ||||| || |||||| ||||||||||||| ||||||| || |||||| ||||| |
|
|
| T |
18756063 |
cctaaattaatcagaaatgtggtagaactgaagctaccaattcaaccagacaagaaactagtaaaatagatttcaagaaggt |
18756144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 363
Target Start/End: Complemental strand, 25114949 - 25114782
Alignment:
| Q |
197 |
ttgaagaagtacaaagactgtttt-gcttgggattataatgaattgcctggattaagcaggaatgtggtagaattgaagttaacaattcggccagacaag |
295 |
Q |
| |
|
|||||||| |||||||||| |||| ||||||||||| |||||| ||| || || || | ||||||||||| | |||||| ||||||| || ||||| |
|
|
| T |
25114949 |
ttgaagaaatacaaagacttttttcgcttgggattacaatgaaatgctaggtttgagtcgagatgtggtagaacttaagttaccaattcgacctgacaaa |
25114850 |
T |
|
| Q |
296 |
aaaccagtaaaacagctttcaaaaaggtttgcacctcagatcatgtcgaagattaaagaggaaatcga |
363 |
Q |
| |
|
|| ||| | |||||| | |||||||||||||||| || ||| ||||||||| ||||| |||||||| |
|
|
| T |
25114849 |
aagccattgaaacagactccaaaaaggtttgcaccacaaatccagtcgaagatcaaagaagaaatcga |
25114782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 309
Target Start/End: Original strand, 24915094 - 24915185
Alignment:
| Q |
218 |
tttgcttgggattataatgaattgcctggattaagcaggaatgtggtagaattgaagttaacaattcggccagacaagaaaccagtaaaaca |
309 |
Q |
| |
|
||||| |||||||| |||||| |||||||||||| | || | ||||| ||||| |||||| ||||||| |||||||| || ||||| ||||| |
|
|
| T |
24915094 |
tttgcatgggattacaatgaaatgcctggattaaaccgggaagtggtggaattaaagttaccaattcgaccagacaaaaagccagtgaaaca |
24915185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0053 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 206 - 310
Target Start/End: Complemental strand, 41061 - 40957
Alignment:
| Q |
206 |
tacaaagactgttttgcttgggattataatgaattgcctggattaagcaggaatgtggtagaattgaagttaacaattcggccagacaagaaaccagtaa |
305 |
Q |
| |
|
|||||||| || || || |||||||| |||||| |||||||| | | |||||| |||||||||||||||||| | ||||| ||| |||| || ||||||| |
|
|
| T |
41061 |
tacaaagattgcttcgcatgggattacaatgaaatgcctggactgaacaggaaagtggtagaattgaagttaccgattcgaccatacaaaaagccagtaa |
40962 |
T |
|
| Q |
306 |
aacag |
310 |
Q |
| |
|
||||| |
|
|
| T |
40961 |
aacag |
40957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 206 - 372
Target Start/End: Original strand, 34892 - 35058
Alignment:
| Q |
206 |
tacaaagactgttttgcttgggattataatgaattgcctggattaagcaggaatgtggtagaattgaagttaacaattcggccagacaagaaaccagtaa |
305 |
Q |
| |
|
|||||||| || ||||| || ||||| ||||| |||||||| |||||||||| ||||| |||||||||||| || |||| |||||||| || ||||| | |
|
|
| T |
34892 |
tacaaagattgctttgcatgagattacaatgagatgcctggactaagcaggaaagtggtggaattgaagttaccagttcgaccagacaaaaagccagtga |
34991 |
T |
|
| Q |
306 |
aacagctttcaaaaaggtttgcacctcagatcatgtcgaagattaaagaggaaatcgaaagactcct |
372 |
Q |
| |
|
|| | || | |||||||| || || ||| | | ||||||||||| ||||||||||||||||| |
|
|
| T |
34992 |
aataaattcctcgtaggtttgctccgcaaatcttaccaaagattaaagaagaaatcgaaagactcct |
35058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 206 - 372
Target Start/End: Original strand, 22069151 - 22069316
Alignment:
| Q |
206 |
tacaaagactgttttgcttgggattataatgaattgcctggattaagcaggaatgtggtagaattgaagttaacaattcggccagacaagaaaccagtaa |
305 |
Q |
| |
|
|||||||| || ||||| |||||||| |||| |||||||| ||| || ||| |||||||||||||||||| ||||||| |||||||| ||| |||| | |
|
|
| T |
22069151 |
tacaaagattgctttgcatgggattacgatgagatgcctggactaaacatgaaagtggtagaattgaagttaccaattcgaccagacaa-aaagcagtga |
22069249 |
T |
|
| Q |
306 |
aacagctttcaaaaaggtttgcacctcagatcatgtcgaagattaaagaggaaatcgaaagactcct |
372 |
Q |
| |
|
|||| || | |||||||| || || ||| | | ||||||||||| ||||||||||||||||| |
|
|
| T |
22069250 |
aacaaattcctcgtaggtttgccccgcaaatcttaccaaagattaaagaagaaatcgaaagactcct |
22069316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 372
Target Start/End: Complemental strand, 8990881 - 8990831
Alignment:
| Q |
322 |
gtttgcacctcagatcatgtcgaagattaaagaggaaatcgaaagactcct |
372 |
Q |
| |
|
|||||||||||| || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8990881 |
gtttgcacctcatataatgtcgaagatcaaagaggaaatcgaaagactcct |
8990831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 26866641 - 26866600
Alignment:
| Q |
197 |
ttgaagaagtacaaagactgttttgcttgggattataatgaa |
238 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26866641 |
ttgaagaaatacaaagactgttttgcttgggattataatgaa |
26866600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 363
Target Start/End: Complemental strand, 22851030 - 22850864
Alignment:
| Q |
197 |
ttgaagaagtacaaagactgttttgcttgggattataatgaattgcctggattaagcaggaatgtggtagaattgaagttaacaattcggccagacaaga |
296 |
Q |
| |
|
||||| || |||||| ||||||||||||||||||| || || |||| || || | | ||||||||||| | |||||| ||||||| || ||||| | |
|
|
| T |
22851030 |
ttgaaaaaatacaaaaactgttttgcttgggattacaacgagatgccaggtttgaattgagatgtggtagaacttaagttaccaattcgacctgacaaaa |
22850931 |
T |
|
| Q |
297 |
aaccagtaaaacagctttcaaaaaggtttgcacctcagatcatgtcgaagattaaagaggaaatcga |
363 |
Q |
| |
|
| ||||| ||||| | ||| |||||||||||| |||||| ||||||||| ||||| |||||||| |
|
|
| T |
22850930 |
agccagtgaaacaaactccaagaaggtttgcaccacagatccagtcgaagatcaaagaagaaatcga |
22850864 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 303
Target Start/End: Complemental strand, 22693016 - 22692919
Alignment:
| Q |
206 |
tacaaagactgttttgcttgggattataatgaattgcctggattaagcaggaatgtggtagaattgaagttaacaattcggccagacaagaaaccagt |
303 |
Q |
| |
|
|||||||| || ||||| |||||||| ||||| ||| ||| || | |||||| |||||||||||||||||| ||||||| |||||||| || ||||| |
|
|
| T |
22693016 |
tacaaagattgctttgcatgggattacaatgagatgcttgggttgaacaggaaggtggtagaattgaagttaccaattcgaccagacaaaaagccagt |
22692919 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 303
Target Start/End: Original strand, 398 - 477
Alignment:
| Q |
224 |
tgggattataatgaattgcctggattaagcaggaatgtggtagaattgaagttaacaattcggccagacaagaaaccagt |
303 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| | ||||| || ||||| || ||||||| ||||||||||||||||| |
|
|
| T |
398 |
tgggattataatgagatgcctggattaaacagggaggtggtggagttgaaactaccaattcgaccagacaagaaaccagt |
477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 309
Target Start/End: Complemental strand, 155342 - 155239
Alignment:
| Q |
206 |
tacaaagactgttttgcttgggattataatgaattgcctggattaagcaggaatgtggtagaattgaagttaacaattcggccagacaagaaaccagtaa |
305 |
Q |
| |
|
|||||||| || ||||| |||||||| ||||| |||||||| ||| | || | ||||| |||||||||||| ||||||| |||||||| || ||||| | |
|
|
| T |
155342 |
tacaaagattgctttgcgtgggattacaatgagatgcctggactaaaccgggaagtggtggaattgaagttaccaattcgaccagacaaaaagccagtga |
155243 |
T |
|
| Q |
306 |
aaca |
309 |
Q |
| |
|
|||| |
|
|
| T |
155242 |
aaca |
155239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 303
Target Start/End: Original strand, 32366 - 32463
Alignment:
| Q |
206 |
tacaaagactgttttgcttgggattataatgaattgcctggattaagcaggaatgtggtagaattgaagttaacaattcggccagacaagaaaccagt |
303 |
Q |
| |
|
|||||||| || ||||| |||||||| |||||| ||||||| |||| | || | ||||||||||| || ||| ||||||| |||||||| || ||||| |
|
|
| T |
32366 |
tacaaagattgctttgcatgggattacaatgaaatgcctggtttaaaccgggaagtggtagaattaaaattaccaattcgaccagacaaaaagccagt |
32463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0241 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0241
Description:
Target: scaffold0241; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 309
Target Start/End: Original strand, 12866 - 12957
Alignment:
| Q |
218 |
tttgcttgggattataatgaattgcctggattaagcaggaatgtggtagaattgaagttaacaattcggccagacaagaaaccagtaaaaca |
309 |
Q |
| |
|
||||| |||||||| |||||| ||||||| |||| | || ||||||| ||||| || ||| ||||||| ||||| || || ||||||||||| |
|
|
| T |
12866 |
tttgcatgggattacaatgaaatgcctggtttaaaccgggatgtggtggaattaaaattaccaattcgaccagagaaaaagccagtaaaaca |
12957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 309
Target Start/End: Original strand, 92535 - 92626
Alignment:
| Q |
218 |
tttgcttgggattataatgaattgcctggattaagcaggaatgtggtagaattgaagttaacaattcggccagacaagaaaccagtaaaaca |
309 |
Q |
| |
|
||||| |||||||| ||||| ||||| || |||||||| | ||||| |||||||||||| |||||| |||||||| || ||||| ||||| |
|
|
| T |
92535 |
tttgcatgggattacaatgagatgccttgactaagcagggaagtggtggaattgaagttaccaattcaaccagacaaaaagccagtgaaaca |
92626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 49719 - 49678
Alignment:
| Q |
197 |
ttgaagaagtacaaagactgttttgcttgggattataatgaa |
238 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||| |||| |
|
|
| T |
49719 |
ttgaagaaatacaaagactattttgcttgggattatattgaa |
49678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 303
Target Start/End: Complemental strand, 13288161 - 13288064
Alignment:
| Q |
206 |
tacaaagactgttttgcttgggattataatgaattgcctggattaagcaggaatgtggtagaattgaagttaacaattcggccagacaagaaaccagt |
303 |
Q |
| |
|
|||||||| || ||||| |||||||| |||||| ||||||| |||| | || | ||||||||||| | ||| ||||||| |||||||| || ||||| |
|
|
| T |
13288161 |
tacaaagattgctttgcatgggattacaatgaaatgcctggtttaaaccgggaagtggtagaattaacattaccaattcgaccagacaaaaagccagt |
13288064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 372
Target Start/End: Original strand, 84592 - 84740
Alignment:
| Q |
224 |
tgggattataatgaattgcctggattaagcaggaatgtggtagaattgaagttaacaattcggccagacaagaaaccagtaaaacagctttcaaaaaggt |
323 |
Q |
| |
|
||||| || |||||| |||||||| ||| |||| | |||||||||||||| | || ||| |||||||| || |||||||||||| | | |||| | |
|
|
| T |
84592 |
tgggactacaatgaaatgcctggactaaacagggaagtggtagaattgaaacttccagttcaaccagacaaaaagccagtaaaacagatccctcaaagat |
84691 |
T |
|
| Q |
324 |
ttgcacctcagatcatgtcgaagattaaagaggaaatcgaaagactcct |
372 |
Q |
| |
|
||||||| |||||| | | ||||| ||||| || |||||||||||||| |
|
|
| T |
84692 |
ttgcaccgcagatcttaccaaagatcaaagaagagatcgaaagactcct |
84740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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