View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11592_low_15 (Length: 385)
Name: NF11592_low_15
Description: NF11592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11592_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 7 - 368
Target Start/End: Original strand, 39947807 - 39948170
Alignment:
| Q |
7 |
gtttttagtacattggaatgggaattgacaaccgtgactccttttgattttctgcattactttgtttacttgttctgccctgaatcttcatcagaaccat |
106 |
Q |
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| T |
39947807 |
gtttttagtacattggaatgggaattgacaactgtgactccttttgattttctgcattactttgtttacttgttctgccctgaatcttcatcagaaccat |
39947906 |
T |
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| Q |
107 |
taatctcacaagctgttgaacatgttctggatatcctaaaaggtaacattctttcctaaatatgtgatcaatccggggttaaggatgaattaataaagat |
206 |
Q |
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| T |
39947907 |
taatctcacaagctgttgaacatgttctggatatcctaaaaggtaaaattctttcctaaatatgtgatcaatccggggttaaggatgaattaataaagat |
39948006 |
T |
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| Q |
207 |
tcctattattcatcttattaaaaactc--aaactctatttttctttttatctagatgttaatttgatggatcttaggccatctgttattgcattggctgc |
304 |
Q |
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| T |
39948007 |
tcctattattcatcttattaaaaactctaaaactctatttttctttttatctagatgttaatttgatggatcttaggccatctgttattgcattggctgc |
39948106 |
T |
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| Q |
305 |
cacattgatggtaacttttgatgctacattaacaagagagatcatggatttgcacataggtgat |
368 |
Q |
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| T |
39948107 |
cacattgatggtaacttttgatgctacattaacaagagagatcatggatttgcacataggtgat |
39948170 |
T |
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