View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11592_low_17 (Length: 328)
Name: NF11592_low_17
Description: NF11592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11592_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 12230775 - 12230461
Alignment:
| Q |
1 |
cctacactgacacgtaggcaggactcttaacaattctttttgtttgatgcattatgtgcaggctcgcgataggatgtacgacatgttggattccgtaatt |
100 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12230775 |
cctatactaacacgtaggcaggactcttaacaattctttttgtttgatgcattatgtgcaggcccgcgataggatgtacgacatgttggattccgtaatt |
12230676 |
T |
|
| Q |
101 |
tcaaggaggagaaatggtcaagattttcaacaggatttcttagagtccttaattatgaaacatagcagaaaatcagatggacaagaagaagatgaaaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12230675 |
tcaaggaggagaaatggtcaagattttcaacaggatttcttagagtccttaattatgaaacatagcagaaaatcagatggacaagaagaagatgaaaata |
12230576 |
T |
|
| Q |
201 |
aacttactgataaacaattaaaagacaatgtattaactctgcttgttgctggccatgataccacaactgctgctcttacatggcttataaaatttcttga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
12230575 |
aacttactgataaacaattaaaagacaatgtattaactctgcttgttgctggccatgataccacaactgctgctcttacatggcttatcaaatttcttga |
12230476 |
T |
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| Q |
301 |
agaaaatcaaaatgt |
315 |
Q |
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||||||||||||||| |
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| T |
12230475 |
agaaaatcaaaatgt |
12230461 |
T |
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