View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11592_low_18 (Length: 318)
Name: NF11592_low_18
Description: NF11592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11592_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 43636789 - 43637081
Alignment:
| Q |
18 |
atttctccatgacccctcaccccaatttgcaccgaatctttctcttcatcaaactccaatgacataattgaacctccggagttgagcatgttaaccaatc |
117 |
Q |
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| T |
43636789 |
atttctccatgacccctcaccccaatttgcaccgaatctttctcttcatcaaactccaatgacataattgaacctccggagttgagcatgttaactaatc |
43636888 |
T |
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| Q |
118 |
caattggagcaaattgaattgaattttttggtatgaccatcacaggagaaactgtcatgagctcaaaactaaaaggttcaagtgaaacttctatagtctc |
217 |
Q |
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| T |
43636889 |
caattggagcaaattgaattgaattttttggtatgaccatcacaggagaaactgtcatgagctcaaaactaaaaggttcaagtgaaacttctatagtctc |
43636988 |
T |
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| Q |
218 |
ggtgcatttaagcagcttcaatttttcatctttaaacatgtatacagcaaatacatcaacacctttgatgcaaattgggtttttccctttgct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43636989 |
ggtgcatttaagcagcttcaatttttcatctttaaacatgtagacagcaaatacatcaacacctttgatgcaaattgggttgttccctttgct |
43637081 |
T |
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