View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11592_low_19 (Length: 311)
Name: NF11592_low_19
Description: NF11592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11592_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 408616 - 408801
Alignment:
| Q |
15 |
cacagatgtgtgatcagattaagagggccagcaaattttgggaaatttggatgaaaaccagtgtcacacttgccttcatcttgtaacttcttaatgatac |
114 |
Q |
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| T |
408616 |
cacagatgtgtgatcagattaagagggccagcaaattttgggaaatttggatgaaaaccagtgtcacacttgccttcatcttgtaacttcttaatgatac |
408715 |
T |
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| Q |
115 |
tttataactttttatgtaatagacgtaaattttcccaaactctttgtaactttttgaagagttgaaactttagggatagtttcaaa |
200 |
Q |
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| T |
408716 |
tttataactttttatgtaatagacgtaaattttctcaaactctttgtaactttttgaagagttgaaactttagggatagtttcaaa |
408801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 202 - 288
Target Start/End: Original strand, 412871 - 412959
Alignment:
| Q |
202 |
ctaaatttaagatgtttgtatacaaacccttgttctataatgttctgtatctatct--agctttttatctgttttctttacatgtatgt |
288 |
Q |
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| T |
412871 |
ctaaatttaagatgtttgtatacaaacccttgttctataatgttctgtatctatctaaagctttttatctgttttctttacatgtatgt |
412959 |
T |
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