View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11592_low_23 (Length: 251)
Name: NF11592_low_23
Description: NF11592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11592_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 5466908 - 5466673
Alignment:
| Q |
1 |
aatttgcatgggataaatcaaggtaattgagcgtattgagagaaccaataaattctggaatgggaactcctttgaaatcattatagcttaagtccaagtg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5466908 |
aatttgcatgggataaatcaaggtaattgagcgtattgagagaaccaataaattcaggaatgggaactcctttgaaatcattatagctcaagtccaagtg |
5466809 |
T |
|
| Q |
101 |
actcaaatgttttaagtcaagtaatgaaggatttatcttacctcccaagggagactgtaaaaatatatctgttgtgcagatatgaaggtgctggagatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5466808 |
actcaaatgttttaagtcaagtaatgaaggatttatcttacctcccaagggagactgtaaaaatatatctgttgtgcagatatgaaggggctggagatca |
5466709 |
T |
|
| Q |
201 |
agcttaagaatgttacctgttttattgtcacattgt |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
5466708 |
agcttaagaatgttacctgttttattgtcacattgt |
5466673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 5481652 - 5481511
Alignment:
| Q |
1 |
aatttgcatgggataaatcaaggtaattgagcgtattgagagaaccaataaattctggaatgggaactcctttgaaatcattatagcttaagtccaagtg |
100 |
Q |
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||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
5481652 |
aatttgcattagataagtcaaggtaattgagcatattgagagaaccaataaattctggaatgggaactcctttgaaatcattaaagcttaggtccaagtg |
5481553 |
T |
|
| Q |
101 |
actcaaatgttttaagtcaagtaatgaaggatttatcttacc |
142 |
Q |
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| T |
5481552 |
actcaaatgttttaagttaactaatgaaggatttatcttacc |
5481511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 12 - 167
Target Start/End: Complemental strand, 5495472 - 5495317
Alignment:
| Q |
12 |
gataaatcaaggtaattgagcgtattgagagaaccaataaattctggaatgggaactcctttgaaatcattatagcttaagtccaagtgactcaaatgtt |
111 |
Q |
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||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||| |||| |
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| T |
5495472 |
gataagtcaaggtaattgagcatattgagggaaccaataaattctggaatgggaactccttcgaaatcattatatcttaggtccaagtgactcaagtgtt |
5495373 |
T |
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| Q |
112 |
ttaagtcaagtaatgaaggatttatcttacctcccaagggagactgtaaaaatata |
167 |
Q |
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| T |
5495372 |
tcaagtcagccaatgaaggatttatcttaccaccaaagggagacagtgaaaatata |
5495317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 5489701 - 5489560
Alignment:
| Q |
1 |
aatttgcatgggataaatcaaggtaattgagcgtattgagagaaccaataaattctggaatgggaactcctttgaaatcattatagcttaagtccaagtg |
100 |
Q |
| |
|
||||||||| ||| || ||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| || ||| ||||||||| ||||||||| |
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| T |
5489701 |
aatttgcattggacaagtcaaggtaattgagcatattgagataaccaataaattctggaatgggagctccttcaaagtcactatagcttaggtccaagtg |
5489602 |
T |
|
| Q |
101 |
actcaaatgttttaagtcaagtaatgaaggatttatcttacc |
142 |
Q |
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|||||| ||||| |||||| |||||||||||||||||||| |
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|
| T |
5489601 |
actcaagtgtttcaagtcagccaatgaaggatttatcttacc |
5489560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 5484516 - 5484379
Alignment:
| Q |
1 |
aatttgcatgggataaatcaaggtaattgagcgtattgagagaaccaataaattctggaatgggaactcctttgaaatcattatagcttaagtccaagtg |
100 |
Q |
| |
|
||||||||| |||| ||||||||||| | | | ||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||||||||||| |
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| T |
5484516 |
aatttgcatttgataggtcaaggtaattcaacattttgagagaaccaatatgttctggaatgggaattccttcgaaatcattgaagcttaagtccaagtg |
5484417 |
T |
|
| Q |
101 |
actcaaatgttttaagtcaagtaatgaaggatttatct |
138 |
Q |
| |
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|||||| ||| | ||||| |||||||||||||||| |
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| T |
5484416 |
actcaagtgtgtcaagtcggcgaatgaaggatttatct |
5484379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 5476565 - 5476442
Alignment:
| Q |
12 |
gataaatcaaggtaattgagcgtattgagagaaccaataaattctggaatgggaactcctttgaaatcattatagcttaagtccaagtgactcaaatgtt |
111 |
Q |
| |
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||||| ||||| ||||| ||| |||||||||||||||||||||||||||||| || ||||||||| | ||| || || | ||||||||||||||| |||| |
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| T |
5476565 |
gataagtcaagataattcagcatattgagagaaccaataaattctggaatggaaattcctttgaagttattgtaactcaggtccaagtgactcaagtgtt |
5476466 |
T |
|
| Q |
112 |
ttaagtcaagtaatgaaggattta |
135 |
Q |
| |
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| |||| | ||||||||||||| |
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| T |
5476465 |
tcaagtaagccaatgaaggattta |
5476442 |
T |
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