View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11592_low_25 (Length: 249)
Name: NF11592_low_25
Description: NF11592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11592_low_25 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 36293775 - 36294014
Alignment:
| Q |
10 |
agatgaagttattcaggtagcttgcaacactaatacactggtattcaattatcattaattttgatccataaacttatcattaatttctatcctaagtaag |
109 |
Q |
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| T |
36293775 |
agatgaagttattcaggtagcttgcaacactaatacactggtattcaattatcattaattttaatccataaacttatcattaatttctatcctaagtaag |
36293874 |
T |
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| Q |
110 |
aacaatatgcttgctgaacttttgaactgatacttggttgcgcataatctaagtaattaaatcaagcctaaatgtagctcttcactattatcgctttctc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36293875 |
aacaatatgcttgctgaacttttgaactgatacttgtttgcgcataatctaagtaattaaatcaagcctaaatgtagctcttcactattatcgctttctc |
36293974 |
T |
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| Q |
210 |
atactatttgacacttgaaagttgtttttcgcaatcgtat |
249 |
Q |
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| T |
36293975 |
atactatttgacacttgaaagttgtttttcgcaatcgtat |
36294014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 36288335 - 36288388
Alignment:
| Q |
10 |
agatgaagttattcaggtagcttgcaacactaatacactggtattcaattatca |
63 |
Q |
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|||||||||||||||||||||| |||||||||||||| | |||||||||||||| |
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| T |
36288335 |
agatgaagttattcaggtagctcgcaacactaatacattagtattcaattatca |
36288388 |
T |
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