View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11592_low_27 (Length: 234)
Name: NF11592_low_27
Description: NF11592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11592_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 29924283 - 29924480
Alignment:
| Q |
15 |
aattacgaggttcaattaattattttgatttcaaaggatccatgggtaaattaaaaatcattaaaaataactataaagaaccaacaaatcaacgtatctg |
114 |
Q |
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| T |
29924283 |
aattacaaggttcaattaattattttgatttcaaagaatccatggataaa-----actcattaaaactaactataaagaaccaacaaatcaacgtatctg |
29924377 |
T |
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| Q |
115 |
ttannnnnnnnnnatcattgaagttatacatacatgacaattataaaatttatcagtaactaagacaatattattgtatattttagcatgtatcgatctt |
214 |
Q |
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| T |
29924378 |
ttatttttttt--atcatttaagttatacatacatgacaattataaaattgatcagtaac-aagacaatattattgtatattttagcatgtatcgatcct |
29924474 |
T |
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