View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11592_low_3 (Length: 740)

Name: NF11592_low_3
Description: NF11592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11592_low_3
NF11592_low_3
[»] chr7 (1 HSPs)
chr7 (18-727)||(19807702-19808411)
[»] chr2 (30 HSPs)
chr2 (41-349)||(39138231-39138540)
chr2 (435-722)||(39137757-39138044)
chr2 (371-722)||(39459127-39459487)
chr2 (376-648)||(39421642-39421926)
chr2 (474-679)||(39414690-39414907)
chr2 (442-720)||(39473285-39473575)
chr2 (370-574)||(39381315-39381519)
chr2 (448-701)||(39397731-39397996)
chr2 (41-180)||(39473058-39473198)
chr2 (584-677)||(39215552-39215645)
chr2 (583-719)||(39222763-39222899)
chr2 (435-574)||(39152610-39152749)
chr2 (84-189)||(39380832-39380937)
chr2 (620-720)||(39152461-39152561)
chr2 (45-152)||(39604098-39604206)
chr2 (73-157)||(44895428-44895512)
chr2 (583-698)||(39192469-39192584)
chr2 (583-698)||(39198149-39198264)
chr2 (84-163)||(39397008-39397087)
chr2 (615-709)||(39369996-39370090)
chr2 (84-162)||(39387850-39387928)
chr2 (584-693)||(39468243-39468352)
chr2 (45-128)||(39099393-39099477)
chr2 (655-722)||(39137715-39137782)
chr2 (387-482)||(39161948-39162043)
chr2 (387-482)||(39207151-39207246)
chr2 (435-486)||(39389027-39389078)
chr2 (72-162)||(39152831-39152921)
chr2 (435-561)||(39370156-39370282)
chr2 (584-646)||(39381541-39381603)
[»] chr8 (2 HSPs)
chr8 (370-480)||(45342158-45342268)
chr8 (91-129)||(45342799-45342837)
[»] chr6 (1 HSPs)
chr6 (400-699)||(16113197-16113508)


Alignment Details
Target: chr7 (Bit Score: 666; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 18 - 727
Target Start/End: Complemental strand, 19808411 - 19807702
Alignment:
Q  18 atttctttatgagaagtctaacagattcttgcagattgactagaatctcagttcatcacttgcgagcaactgcaaacctgttccatcaatggttggactt 117  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  19808411 atttctttatgagaggtctaacagattcttgcagattgactagaatctcagttcatcacttgggagcaactgcaaacttgttccatcaatggttggactt 19808312  T
Q  118 aattgatcatccgtgctagatgcaactgcatatttggatagcagaggattaagatccctcatatttttagaaacaacagcaaatgaagatgagaaatgga 217  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19808311 aatcgatcatccgtgctagatgcaactgcatatttggatagcagaggattaagatccctcatatttttagaaacaacagcaaatgaagatgacaaatgga 19808212  T
Q  218 tttttggaatgtatgggtgagagaggaaatcattatattaattgttataatcaaagtaaatatagaagcttaactgaatcaccaaagacagtgttaaatt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19808211 tttttggaatgtatgggtgagagaggaaatcattatattaattgttatagtcaaagtcaatatagaagcttaactgaatcaccaaagacagtgttaaatt 19808112  T
Q  318 gattaataattataaacaagactagaaatagttgcacttatataatccaaacatgtaaatcaggttattaaaaatatcaacgtcataaaaagaaacagct 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  19808111 gattaataattataaacaagactagaaatagttgcacttatataatccaaacatgtagatcaggttattaaaaatatcaacatcataaaaagaaacagct 19808012  T
Q  418 gaaatgaaactccttctataaactagatgaataagaacttttaccagatgctttttcctcatcaaaatagtttattaatgattcaaattgtttctctgtc 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19808011 gaaatgaaactccttctataaactagatgaataagaacttttacccgatgctttttcctcatcaaaatagtttattaatgattcaaattgtttctctgtc 19807912  T
Q  518 aactcagactccttcaattgtccatcaaatttatccagctttgaaccaggatccttgatttttccttcttttaacttgagctctttgaccagtactttga 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19807911 aactcagactccttcaattgtccatcaaatttatccagctttgaaccaggatccttgatttttccttcttttaacttgagctctttgaccagtactttga 19807812  T
Q  618 acttattctcttttgactcgagttctttccacctttcttcaatttgattctcttttgatttgtattcctcgacttggctttcaagttgcttctcttttga 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19807811 acttattctcttttgactcgagttctttccacctttcttcaatttgattctcttttgatttgtattcctcgacttggctttcaagttgcttctcttttga 19807712  T
Q  718 tttgatgtcc 727  Q
    ||||| ||||    
T  19807711 tttgaagtcc 19807702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 41 - 349
Target Start/End: Complemental strand, 39138540 - 39138231
Alignment:
Q  41 gattcttgcagattgactagaatctcagtt-catcacttgcgagcaactgcaaacctgttccatcaatggttggacttaattgatcatccgtgctagatg 139  Q
    |||||||||||||| ||||||||  ||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  39138540 gattcttgcagattaactagaatgacagtttcatcacttgggagcaactgcaaacttgttccatcaatggttggacttaattgatcatccgtgttagatg 39138441  T
Q  140 caactgcatatttggatagcagaggattaagatccctcatatttttagaaacaacagcaaatgaagatgagaaatggatttttggaatgtatgggtgaga 239  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||  |||||||||||||||||||||||||    
T  39138440 caactgcatatttggatagcagagaattaagatccctcatatttttagaagcaacagcaaatgaagatgacaataggatttttggaatgtatgggtgaga 39138341  T
Q  240 gaggaaatcattatattaattgttataatcaaagtaaatatagaagcttaactgaatcaccaaagacagtgttaaattgattaataattataaacaagac 339  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39138340 gagggaatcattatattaattgttataatcaaagtcaatatagaagcttaactgaatcaccaaagatagtgttaaattgattaataattataaacaagac 39138241  T
Q  340 tagaaatagt 349  Q
    | ||||||||    
T  39138240 ttgaaatagt 39138231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 435 - 722
Target Start/End: Complemental strand, 39138044 - 39137757
Alignment:
Q  435 ataaactagatgaataagaacttttaccagatgctttttcctcatcaaaatagtttattaatgattcaaattgtttctctgtcaactcagactccttcaa 534  Q
    |||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||  |||| |||||||||    
T  39138044 ataaactagatgaataagaactcttacccgattctttttcctcatcaaaatagtttatcaatgattcaaattgtttctctgtcagttcaggctccttcaa 39137945  T
Q  535 ttgtccatcaaatttatccagctttgaaccaggatccttgatttttccttcttttaacttgagctctttgaccagtactttgaacttattctcttttgac 634  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39137944 ttgtccatcaaatttatccagctttgaaccaggatccttgatctgtccttcttttaacttgagctctttgaccagtactttgaacttattctcttttgac 39137845  T
Q  635 tcgagttctttccacctttcttcaatttgattctcttttgatttgtattcctcgacttggctttcaagttgcttctcttttgatttga 722  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39137844 tcgagttctttccaccgttcttcaatttgcttctcttttgatttgtaatcctcgacttggctttcaagttgcttctcttttgatttga 39137757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 371 - 722
Target Start/End: Complemental strand, 39459487 - 39459127
Alignment:
Q  371 tgtaaatcaggttattaaaaatatcaacgtcataaaaagaaacagctgaaatgaaactccttctataaactagatgaataagaacttttaccagatgctt 470  Q
    |||| |||||||||| ||||||| || | |||| ||| ||||  | |||||||||| |  ||| |||| ||| ||||||||||||  ||||| ||| ||     
T  39459487 tgtagatcaggttataaaaaataaca-catcattaaatgaaattgttgaaatgaaatt--ttcaataagctaaatgaataagaacacttacccgattctg 39459391  T
Q  471 tttcctcatcaaaatagtttattaatgattcaaattgtttctctgtcaactcagactccttcaattgtccatcaaatttatccagctttgaaccaggatc 570  Q
    ||||||||||||||||||| ||||||| |||| |||||||| |||||||||||| |||||||| |||||||||||| ||||  ||||||||  | |||||    
T  39459390 tttcctcatcaaaatagttcattaatggttcatattgtttcactgtcaactcaggctccttcacttgtccatcaaaattattaagctttgactctggatc 39459291  T
Q  571 cttgatttttcct------------tcttttaacttgagctctttgaccagtactttgaacttattctcttttgactcgagttctttccacctttcttca 658  Q
    ||||| || ||||            |||||||||||||||||||| || ||||||||||||||||||||||  |  |||| |||||||| |  |||||||    
T  39459290 cttgacttgtccttcaaattgcttgtcttttaacttgagctctttcactagtactttgaacttattctcttcagcatcgaattctttccgctgttcttca 39459191  T
Q  659 atttgattctcttttgatttgtattcctcgacttggctttcaagttgcttctcttttgatttga 722  Q
    | ||| ||||||||| ||||| | ||||| |  |||||||||| |||||||| |||||| ||||    
T  39459190 aattgcttctcttttaatttgaagtcctcaaactggctttcaaattgcttcttttttgaattga 39459127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 376 - 648
Target Start/End: Original strand, 39421642 - 39421926
Alignment:
Q  376 atcaggttattaaaaatatcaacgtcataaaaagaaacagctgaaatgaaactccttctataaactagatgaataagaacttttaccagatgctttttcc 475  Q
    ||||| ||||||||||||||||| ||||   ||||||||| ||||||||||||| ||| ||||| ||||||||||||||| |||||||||| | ||||||    
T  39421642 atcagattattaaaaatatcaacatcattgtaagaaacagttgaaatgaaactctttcaataaattagatgaataagaacatttaccagattcattttcc 39421741  T
Q  476 tcatcaaaatagtttattaatgattcaaattgtttctctgtcaactcagactccttcaattgtccatcaaatttatccagctttgaaccaggatccttga 575  Q
    ||||||||||| | |  || | |  || | ||||||||||||||||||| |||||||| |||| |||| || ||||  ||||| ||  | ||||||||||    
T  39421742 tcatcaaaatattcttctattaaagcatactgtttctctgtcaactcaggctccttcagttgttcatctaacttatttagcttcgactcgggatccttga 39421841  T
Q  576 tttttcct------------tcttttaacttgagctctttgaccagtactttgaacttattctcttttgactcgagttctttcca 648  Q
     |  | ||            |||||||| ||||||||||| || |||||||||||||||||||||||||||| ||||||||||||    
T  39421842 ctagtgctccaaatcgcttgtcttttaatttgagctctttcactagtactttgaacttattctcttttgacttgagttctttcca 39421926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 474 - 679
Target Start/End: Original strand, 39414690 - 39414907
Alignment:
Q  474 cctcatcaaaatagtttattaatgattcaaattgtttctctgtcaactcagactccttcaattgtccatcaaatttatccagctttgaaccaggatcctt 573  Q
    ||||||||||||  |||||||| | |||| ||||||| ||| |||||||||||||||||   |||||||||||||| |||||||||||  ||||||||||    
T  39414690 cctcatcaaaatcttttattaacggttcatattgtttttctctcaactcagactccttccggtgtccatcaaatttttccagctttgactcaggatcctt 39414789  T
Q  574 gatttttccttct------------tttaacttgagctctttgaccagtactttgaacttattctcttttgactcgagttctttccacctttcttcaatt 661  Q
     | || ||||||             ||||||||||||||||||||||||| ||||||||||||||| |||| || |||||||||||| | |||||||| |    
T  39414790 aacttgtccttcaaactgtttctcatttaacttgagctctttgaccagtagtttgaacttattctcatttgtcttgagttctttccatcgttcttcaaat 39414889  T
Q  662 tgattctcttttgatttg 679  Q
    || |||||||||||||||    
T  39414890 tgcttctcttttgatttg 39414907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 442 - 720
Target Start/End: Original strand, 39473285 - 39473575
Alignment:
Q  442 agatgaataagaacttttaccagatgctttttcctcatcaaaatagtttattaatgattcaaattgtttctctgtcaactcagactccttcaattgtcca 541  Q
    |||||||||||||| |||||| ||| || |||||||||||||||| |||||||||| |||| || |||||||||||||||||| |||||||  |  ||||    
T  39473285 agatgaataagaacatttacccgattctatttcctcatcaaaatattttattaatggttcatatcgtttctctgtcaactcaggctccttcggtgttcca 39473384  T
Q  542 tcaaatttatccagctttgaaccaggatccttgatttttcct------------tcttttaacttgagctctttgaccagtactttgaacttattctctt 629  Q
    |||  |||||  ||||||||  | ||||||| || || ||||            ||||||||||||||    || || ||||||||||||||||||||||    
T  39473385 tcatgtttatttagctttgactcgggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactagtactttgaacttattctctt 39473484  T
Q  630 ttgactcgagttctttccacctttcttcaatttgattctcttttgatttgtattcctcgacttggctttcaagttgcttctcttttgattt 720  Q
    ||||||||||||||||||| | |||||||| ||| ||| || |||||||| ||||||| || | | ||| || |||||||| |||| ||||    
T  39473485 ttgactcgagttctttccatcgttcttcaaattgcttcgctattgatttgaattcctcaaccttggttttaaattgcttctttttttattt 39473575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 370 - 574
Target Start/End: Original strand, 39381315 - 39381519
Alignment:
Q  370 atgtaaatcaggttattaaaaatatcaacgtcataaaaagaaacagctgaaatgaaactccttctataaactagatgaataagaacttttaccagatgct 469  Q
    ||||| |||| |||| ||||| ||||||| |||| |||||||||| ||||||||||| || |||  ||||||| |||||||||||| |||||||||| ||    
T  39381315 atgtagatcaagttaataaaagtatcaacatcattaaaagaaacaactgaaatgaaattctttcagtaaactatatgaataagaacatttaccagattct 39381414  T
Q  470 ttttcctcatcaaaatagtttattaatgattcaaattgtttctctgtcaactcagactccttcaattgtccatcaaatttatccagctttgaaccaggat 569  Q
    |  ||||| |||| ||| ||| |||||| |||| |||||||  ||||||| | || ||| |||| ||||||||| |||||||  ||||||||| ||||||    
T  39381415 tgctcctcgtcaatatattttcttaatgcttcatattgtttacctgtcaatttaggctctttcatttgtccatccaatttatttagctttgaatcaggat 39381514  T
Q  570 ccttg 574  Q
    |||||    
T  39381515 ccttg 39381519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 448 - 701
Target Start/End: Original strand, 39397731 - 39397996
Alignment:
Q  448 ataagaacttttaccagatgctttttcctcatcaaaatagtttattaatgattcaaattgtttctctgtcaactcagactccttcaattgtccatcaaat 547  Q
    |||||||| |||||| ||| ||||||||||||  | ||| ||| |||| | |||| |||||||| |||||||||||| |||||||| |||||||||||||    
T  39397731 ataagaacctttacccgattctttttcctcattgatatatttttttaacgcttcatattgtttccctgtcaactcaggctccttcagttgtccatcaaat 39397830  T
Q  548 ttatccagctttgaaccaggatccttgatttttcct------------tcttttaacttgagctctttgaccagtactttgaacttattctcttttgact 635  Q
    ||||||||| ||||  || | ||||||| |   |||            ||||||||||  ||||| |  |||  ||||||||||| ||||||||||||||    
T  39397831 ttatccagccttgactcaagttccttgactcgacctgcaacctgcttctcttttaactcaagctcctgcacctttactttgaactgattctcttttgact 39397930  T
Q  636 cgagttctttccacctttcttcaatttgattctcttttgatttgtattcctcgacttggctttcaa 701  Q
    | |||| |||||||| |||||||||||| || |||||||||||| | ||||| |||||||||||||    
T  39397931 caagttttttccaccgttcttcaatttgcttatcttttgatttgaaatcctcaacttggctttcaa 39397996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 41 - 180
Target Start/End: Original strand, 39473058 - 39473198
Alignment:
Q  41 gattcttgcagattgactagaatctcagtt-catcacttgcgagcaactgcaaacctgttccatcaatggttggacttaattgatcatccgtgctagatg 139  Q
    |||||||||||||  |||||||| |||||| ||||||||| |||||||||||||| |||| ||||| ||||||||||||||||||||||| ||  |||||    
T  39473058 gattcttgcagatcaactagaatgtcagtttcatcacttgggagcaactgcaaacttgtttcatcagtggttggacttaattgatcatccatgtaagatg 39473157  T
Q  140 caactgcatatttggatagcagaggattaagatccctcata 180  Q
     | |||||||||| |||||||||   ||||| |||||||||    
T  39473158 tagctgcatatttagatagcagatatttaagctccctcata 39473198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 584 - 677
Target Start/End: Complemental strand, 39215645 - 39215552
Alignment:
Q  584 tcttttaacttgagctctttgaccagtactttgaacttattctcttttgactcgagttctttccacctttcttcaatttgattctcttttgatt 677  Q
    ||||||||||||| ||| || ||| ||||||||||||||||||||||| |||| ||||||||||||| | |||||| ||| |||||||||||||    
T  39215645 tcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtccttcaaattgcttctcttttgatt 39215552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 583 - 719
Target Start/End: Complemental strand, 39222899 - 39222763
Alignment:
Q  583 ttcttttaacttgagctctttgaccagtactttgaacttattctcttttgactcgagttctttccacctttcttcaatttgattctcttttgatttgtat 682  Q
    |||||| || |||||||| || |||  | |||||||||||||||||| |||||| ||||  ||||| | |||||||| ||| ||||||||||||||  |     
T  39222899 ttctttgaagttgagctccttcacctttgctttgaacttattctcttctgactcaagtttattccatcgttcttcaaattgcttctcttttgatttaaac 39222800  T
Q  683 tcctcgacttggctttcaagttgcttctcttttgatt 719  Q
    ||||||||||||||||| |  ||||||| ||||||||    
T  39222799 tcctcgacttggctttcgaaatgcttcttttttgatt 39222763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 435 - 574
Target Start/End: Complemental strand, 39152749 - 39152610
Alignment:
Q  435 ataaactagatgaataagaacttttaccagatgctttttcctcatcaaaatagtttattaatgattcaaattgtttctctgtcaactcagactccttcaa 534  Q
    ||||||||||  ||||| ||| |||||| ||| || |||||||||||||||| |||||||||| | || |||||||||||||||| |||  ||||||| |    
T  39152749 ataaactagacaaataaaaacatttacctgattctatttcctcatcaaaatattttattaatggtccatattgtttctctgtcaaatcatgctccttcga 39152650  T
Q  535 ttgtccatcaaatttatccagctttgaaccaggatccttg 574  Q
     |||||||||  |||||  ||||||||  || ||||||||    
T  39152649 ctgtccatcatgtttatttagctttgactcaagatccttg 39152610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 84 - 189
Target Start/End: Original strand, 39380832 - 39380937
Alignment:
Q  84 caactgcaaacctgttccatcaatggttggacttaattgatcatccgtgctagatgcaactgcatatttggatagcagaggattaagatccctcatattt 183  Q
    ||||||||||| ||||||  |||||||  |||||||| |||||||| ||  |||||||||||||||||| |||||||||   ||||| ||||||||||||    
T  39380832 caactgcaaacttgttcccccaatggtatgacttaatcgatcatccatgtaagatgcaactgcatatttagatagcagatatttaagctccctcatattt 39380931  T
Q  184 ttagaa 189  Q
     |||||    
T  39380932 atagaa 39380937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 620 - 720
Target Start/End: Complemental strand, 39152561 - 39152461
Alignment:
Q  620 ttattctcttttgactcgagttctttccacctttcttcaatttgattctcttttgatttgtattcctcgacttggctttcaagttgcttctcttttgatt 719  Q
    |||||||||||||||||||| |||||||||| || ||||| ||| |||||||||| |||| | ||||| || ||| |||||| || ||||| ||||||||    
T  39152561 ttattctcttttgactcgagctctttccaccgtttttcaaattgcttctcttttgttttgaagtcctcaacctggatttcaaatttcttcttttttgatt 39152462  T
Q  720 t 720  Q
    |    
T  39152461 t 39152461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 45 - 152
Target Start/End: Complemental strand, 39604206 - 39604098
Alignment:
Q  45 cttgcagattgactagaatctcagtt-catcacttgcgagcaactgcaaacctgttccatcaatggttggacttaattgatcatccgtgctagatgcaac 143  Q
    ||||||||||  ||||||| |||||| | ||||||| |||||||||||||| | ||||||||||||| ||| || |||||||||| |||  | ||| |||    
T  39604206 cttgcagattatctagaatttcagtttcgtcacttgggagcaactgcaaacttcttccatcaatggtaggagttgattgatcatctgtgtaacatgtaac 39604107  T
Q  144 tgcatattt 152  Q
    |||||||||    
T  39604106 tgcatattt 39604098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 44895428 - 44895512
Alignment:
Q  73 tcacttgcgagcaactgcaaacctgttccatcaatggttggacttaattgatcatccgtgctagatgcaactgcatatttggata 157  Q
    ||||||| |||||| ||||||| ||||||| |||||||  | ||||||||||||||| || |||||| |||||||||||| ||||    
T  44895428 tcacttgggagcaattgcaaacttgttccaccaatggtacggcttaattgatcatccatgttagatgtaactgcatatttagata 44895512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 583 - 698
Target Start/End: Original strand, 39192469 - 39192584
Alignment:
Q  583 ttcttttaacttgagctctttgaccagtactttgaacttattctcttttgactcgagttctttccacctttcttcaatttgattctcttttgatttgtat 682  Q
    ||||||||| |||||||| || |||  | ||||||||||||||||||||||||| |||||  |||| | | |||| | ||| ||||||||||||||| |     
T  39192469 ttcttttaagttgagctccttcacctttgctttgaacttattctcttttgactcaagttcactccatcgtccttctaattgcttctcttttgatttgaac 39192568  T
Q  683 tcctcgacttggcttt 698  Q
    ||||| ||||| ||||    
T  39192569 tcctccacttgacttt 39192584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 583 - 698
Target Start/End: Original strand, 39198149 - 39198264
Alignment:
Q  583 ttcttttaacttgagctctttgaccagtactttgaacttattctcttttgactcgagttctttccacctttcttcaatttgattctcttttgatttgtat 682  Q
    ||||||||| |||||||| || |||  | ||||||||||||||||||||||||| |||||  |||| | | |||| | ||| ||||||||||||||| |     
T  39198149 ttcttttaagttgagctccttcacctttgctttgaacttattctcttttgactcaagttcactccatcgtccttctaattgcttctcttttgatttgaac 39198248  T
Q  683 tcctcgacttggcttt 698  Q
    ||||| ||||| ||||    
T  39198249 tcctccacttgacttt 39198264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 39397008 - 39397087
Alignment:
Q  84 caactgcaaacctgttccatcaatggttggacttaattgatcatccgtgctagatgcaactgcatatttggatagcagag 163  Q
    ||||||||||| ||||||||||||||| ||||||||| | |||||| ||   ||||||||||||| ||| ||||||||||    
T  39397008 caactgcaaacttgttccatcaatggtaggacttaatcggtcatccatgtaggatgcaactgcatgtttagatagcagag 39397087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 615 - 709
Target Start/End: Complemental strand, 39370090 - 39369996
Alignment:
Q  615 tgaacttattctcttttgactcgagttctttccacctttcttcaatttgattctcttttgatttgtattcctcgacttggctttcaagttgcttc 709  Q
    ||||||| ||||||||| |||| ||||||||||||| | |||||| ||| || ||||| |||||| | | |||||||||| |||||| |||||||    
T  39370090 tgaacttgttctcttttaactcaagttctttccaccgtccttcaaattgcttttctttcgatttgaagtgctcgacttgggtttcaaattgcttc 39369996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 162
Target Start/End: Original strand, 39387850 - 39387928
Alignment:
Q  84 caactgcaaacctgttccatcaatggttggacttaattgatcatccgtgctagatgcaactgcatatttggatagcaga 162  Q
    ||||||||||| ||||||| |||||||  ||||||||||||||||| ||  |||| ||||||||||||| || ||||||    
T  39387850 caactgcaaacttgttccaccaatggtacgacttaattgatcatccatgtaagattcaactgcatatttagaaagcaga 39387928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 584 - 693
Target Start/End: Complemental strand, 39468352 - 39468243
Alignment:
Q  584 tcttttaacttgagctctttgaccagtactttgaacttattctcttttgactcgagttctttccacctttcttcaatttgattctcttttgatttgtatt 683  Q
    ||||||||||||| ||| || |||  ||||||||||  ||||||||||||||  | |||||| |||| ||| |||| ||| || |||||||||||| | |    
T  39468352 tcttttaacttgaactccttcacctttactttgaaccgattctcttttgacttcaattctttacaccgttcatcaaattgcttatcttttgatttgaaat 39468253  T
Q  684 cctcgacttg 693  Q
    |||| |||||    
T  39468252 cctcaacttg 39468243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 39099477 - 39099393
Alignment:
Q  45 cttgcagattgactagaatctcagtt-catcacttgcgagcaactgcaaacctgttccatcaatggttggacttaattgatcatc 128  Q
    ||||||||||  ||||||| |||||| | ||||||| |||||||| ||||| | ||||||||||||| ||| || ||||||||||    
T  39099477 cttgcagattatctagaatttcagtttcgtcacttgggagcaacttcaaacttcttccatcaatggtaggagttgattgatcatc 39099393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 655 - 722
Target Start/End: Complemental strand, 39137782 - 39137715
Alignment:
Q  655 ttcaatttgattctcttttgatttgtattcctcgacttggctttcaagttgcttctcttttgatttga 722  Q
    ||||| ||| ||||||||||||||| | ||||| |||||| |||| | |||||||| |||||||||||    
T  39137782 ttcaagttgcttctcttttgatttgaaatcctcaacttggttttcgaattgcttcttttttgatttga 39137715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 387 - 482
Target Start/End: Complemental strand, 39162043 - 39161948
Alignment:
Q  387 aaaaatatcaacgtcataaaaagaaacagctgaaatgaaactccttctataaactagatgaataagaacttttaccagatgctttttcctcatcaa 482  Q
    |||||||||| | |||| ||||| ||||| |  ||| ||| || ||| |||| ||||||||| |||||| |||||| ||| |||||||||||||||    
T  39162043 aaaaatatcatcatcattaaaaggaacagttataataaaattctttcaataatctagatgaagaagaacatttaccggattctttttcctcatcaa 39161948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 387 - 482
Target Start/End: Original strand, 39207151 - 39207246
Alignment:
Q  387 aaaaatatcaacgtcataaaaagaaacagctgaaatgaaactccttctataaactagatgaataagaacttttaccagatgctttttcctcatcaa 482  Q
    |||||||||| | |||| ||||| ||||| |  ||| ||| || ||| |||| ||||||||| |||||| |||||| ||| |||||||||||||||    
T  39207151 aaaaatatcatcatcattaaaaggaacagttataataaaattctttcaataatctagatgaagaagaacatttaccggattctttttcctcatcaa 39207246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 435 - 486
Target Start/End: Original strand, 39389027 - 39389078
Alignment:
Q  435 ataaactagatgaataagaacttttaccagatgctttttcctcatcaaaata 486  Q
    ||||||| ||||||||||||| |||||| ||| |||||||| ||||||||||    
T  39389027 ataaactggatgaataagaacatttaccggattctttttccccatcaaaata 39389078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 39152921 - 39152831
Alignment:
Q  72 atcacttgcgagcaactgcaaacctgttccatcaatggttggacttaattgatcatccgtgctagatgcaactgcatatttggatagcaga 162  Q
    |||||||| |||||||||||||| |||||||||||| || || || | || ||||||| ||  ||||| | |||||||||| |||| ||||    
T  39152921 atcacttgggagcaactgcaaacttgttccatcaatagtagggctaatttcatcatccatgtaagatgtagctgcatatttagatatcaga 39152831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 435 - 561
Target Start/End: Complemental strand, 39370282 - 39370156
Alignment:
Q  435 ataaactagatgaataagaacttttaccagatgctttttcctcatcaaaatagtttattaatgattcaaattgtttctctgtcaactcagactccttcaa 534  Q
    ||||||||||||||||||||| ||||||  |  ||||||||||  ||| ||  | | ||||||  ||| ||||||||| |||| |||||| || ||| |     
T  39370282 ataaactagatgaataagaacatttacccaaatctttttcctcggcaatatgctctgttaatgcgtcatattgtttctttgtcgactcaggcttctttag 39370183  T
Q  535 ttgtccatcaaatttatccagctttga 561  Q
    ||||||||| ||||||| || ||||||    
T  39370182 ttgtccatccaatttattcatctttga 39370156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 584 - 646
Target Start/End: Original strand, 39381541 - 39381603
Alignment:
Q  584 tcttttaacttgagctctttgaccagtactttgaacttattctcttttgactcgagttctttc 646  Q
    ||||||||||||||||| || | |  ||||||||||| |||||||||||| ||| ||||||||    
T  39381541 tcttttaacttgagctcattcatctttactttgaactcattctcttttgattcgtgttctttc 39381603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 370 - 480
Target Start/End: Complemental strand, 45342268 - 45342158
Alignment:
Q  370 atgtaaatcaggttattaaaaatatcaacgtcataaaaagaaacagctgaaatgaaactccttctataaactagatgaataagaacttttaccagatgct 469  Q
    ||||| ||||||||||||||||||||||| |||  |||||||| || |||||||||| || ||| ||||||||||||||||| || |||||||| || ||    
T  45342268 atgtagatcaggttattaaaaatatcaacatcaacaaaagaaatagttgaaatgaaattctttcaataaactagatgaataacaaattttaccaaattct 45342169  T
Q  470 ttttcctcatc 480  Q
    |||||||||||    
T  45342168 ttttcctcatc 45342158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 45342837 - 45342799
Alignment:
Q  91 aaacctgttccatcaatggttggacttaattgatcatcc 129  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  45342837 aaacctgttccatcaatggtagtacttaattgatcatcc 45342799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 400 - 699
Target Start/End: Complemental strand, 16113508 - 16113197
Alignment:
Q  400 tcataaaaagaaacagctgaaatgaaactccttctataaactagatgaataagaacttttaccagatgctttttcctcatcaaaatagtttattaatgat 499  Q
    |||| ||||||| ||| |||||||||  |  ||| ||||||||||||||| |||||  ||||| ||| |||||||||| |||| ||  ||| | |||| |    
T  16113508 tcattaaaagaagcagttgaaatgaatttttttcaataaactagatgaatgagaacacttacccgattctttttcctcgtcaatatgttttttaaatgct 16113409  T
Q  500 tcaaattgtttctctgtcaactcagactccttcaattgtccatcaaatttatccagctttgaaccaggatccttgatttttccttc------------tt 587  Q
    ||| | |||||| |||| ||||||| |||||||| ||||||  ||||||  | |||||||||  || | ||||||| || | ||||            ||    
T  16113408 tcagagtgtttccctgttaactcaggctccttcagttgtccgccaaattcgttcagctttgactcaagctccttgacttgtacttcaatctgcttctctt 16113309  T
Q  588 ttaacttgagctctttgaccagtactttgaacttattctcttttgactcgagttctttccacctttcttcaatttgattctcttttgatttgtattcctc 687  Q
    ||||||||||||| ||  ||  ||||||||||| |||||||||||| |||||||||||||||| |||||||| ||| || || ||||||||| | | |||    
T  16113308 ttaacttgagctccttctcctttactttgaactgattctcttttgattcgagttctttccaccgttcttcaaattgcttatcgtttgatttgaaatactc 16113209  T
Q  688 gacttggctttc 699  Q
     |||||||||||    
T  16113208 aacttggctttc 16113197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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