View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11592_low_4 (Length: 636)
Name: NF11592_low_4
Description: NF11592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11592_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 4e-98; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 15380748 - 15380961
Alignment:
| Q |
1 |
tatcaattgggttgaaactttggaatctgaactatttcttataatgggtttttcttagtcaatctcctcattttggacagtatgctttcttctttcaact |
100 |
Q |
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| T |
15380748 |
tatcaattgggttgaaactttggaatttgaactatttcttataatgggtttttcttagtcaatctcctcattttggacagtatgctttcttctttcaact |
15380847 |
T |
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| Q |
101 |
tgcacaagtcactttgatgggatcccacagttnnnnnnnntgttactagtagtaagttgaagctagctgcattgtgtggacttttggagtgtgcaatgca |
200 |
Q |
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| T |
15380848 |
tgcacaagtcactttgatgggatcccacagttaaaaaaaatgttactggtagtaagttgaagctagctgcattgtgtggacttttggagtgtgcaatgca |
15380947 |
T |
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| Q |
201 |
cgtgagtatgtgtg |
214 |
Q |
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|||||||||||||| |
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| T |
15380948 |
cgtgagtatgtgtg |
15380961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 420 - 619
Target Start/End: Original strand, 15381183 - 15381385
Alignment:
| Q |
420 |
ggtttttggagcctttttcctgtgtgatgtgtattgaattcattaatagcaattataaattttatgatatatatc---ttttcacatatctcctttactt |
516 |
Q |
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| T |
15381183 |
ggtttttggagcctttttcctgtgtgatgtgtattgaattcattaatagcaattataaattttattatatcttttcagttttcacatatctactttactt |
15381282 |
T |
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| Q |
517 |
tcattcattttatatatcagcttcttaattgacccttgaatgaattctgctcttgatgaaatctatgcatgaatcttataaaggattcagtcatggttga |
616 |
Q |
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| T |
15381283 |
tctttcattctatatatcagcttcttaattgacccttgaatgaattctgctcatgatgaaatctatgcatgaatcttataaaggattcagtcatggttga |
15381382 |
T |
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| Q |
617 |
tcc |
619 |
Q |
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||| |
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| T |
15381383 |
tcc |
15381385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 15381025 - 15381086
Alignment:
| Q |
278 |
cctaactatacaggacccattatctggtgtccaacgtgtgtgatggaaacacgtatctatag |
339 |
Q |
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| T |
15381025 |
cctaactatacaggacccattatctggtgtccaacgtgtgtggtggaaacacgtatctatag |
15381086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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