View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11592_low_5 (Length: 635)
Name: NF11592_low_5
Description: NF11592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11592_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 559; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 21 - 618
Target Start/End: Original strand, 33119146 - 33119747
Alignment:
| Q |
21 |
tttgccaatatgtaatagggaaggaaagaggaaagtatagcaattttgaagaagatttatccacctgaggaagttgaagctgagatcaaagttttgagtg |
120 |
Q |
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| T |
33119146 |
tttgccaatatgtaatagggaaggaaagaggaaagtatagcaattttgaagaagatttatccacctgaggaagttgaagctgagatcaaagttttgagtg |
33119245 |
T |
|
| Q |
121 |
aatcaactgaaaaggaaattaaggaagcagaattttcaaacaacataacaatagtacaaatgatgaaaaccaaagctgtaaggagaggtttatatgcagg |
220 |
Q |
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| T |
33119246 |
aatcaactgaaaaggaaattaaggaagcagaattttcaaacaacataacaatagtacaaatgatgaaaaccaaagctataaggagaggtttatatgcagg |
33119345 |
T |
|
| Q |
221 |
aatgggacttgcaattttccaacaatttgttggaatcaacactgtcatg-----tactacagtccagccattattcagttagccggttttgcatccaatc |
315 |
Q |
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| T |
33119346 |
aatgggacttgcaattttccaacaatttgttggaatcaacactgtcatgtactatactacagtccagccattattcagttagccggttttgcatccaatc |
33119445 |
T |
|
| Q |
316 |
aaacggcacttcttctgtcactcataacatctggactaaatgcatttggttccattttaagcatgtacttgattgaaaaaagcgggagaaagaaactcgc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
33119446 |
aaacggcacttcttctgtcactcataacatctggactaaatgcatttggttccattttaagcatgtaattgattgaaaaaagc-ggagaaagaaactcgc |
33119544 |
T |
|
| Q |
416 |
tttaataagtttgacaggagttgtaggatcgctaattcttcttaccgttgtttttcatcagactgcgattacctcaccacttattagtccaacagaaact |
515 |
Q |
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| T |
33119545 |
tttaataagtttgacaggagttgtaggatcactaattcttcttaccgttgtttttcatcagactgcgattacctcaccacttattagtccaactgaaact |
33119644 |
T |
|
| Q |
516 |
gctaacttcaattccacttgccctggttactctaaagctattgaccctgctaaatgggattgtatgacttgtcttaaagatgaatcaaattgtggcttct |
615 |
Q |
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| T |
33119645 |
gctaacttcaattccacttgccctggttactctaaagctattgaccctgctaaatgggattgtatgacttgtcttaaagatgaatcaaattgtggcttct |
33119744 |
T |
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| Q |
616 |
gtg |
618 |
Q |
| |
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||| |
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| T |
33119745 |
gtg |
33119747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 204 - 428
Target Start/End: Original strand, 33116180 - 33116404
Alignment:
| Q |
204 |
agaggtttatatgcaggaatgggacttgcaattttccaacaatttgttggaatcaacactgtcatgtactacagtccagccattattcagttagccggtt |
303 |
Q |
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| T |
33116180 |
agaggtttgtatgcaggaatgggccttcaaatattccaacaatttgtaggaatcaataccgtaatgtacttcagcccaactattgttcaactagctggtt |
33116279 |
T |
|
| Q |
304 |
ttgcatccaatcaaacggcacttcttctgtcactcataacatctggactaaatgcatttggttccattttaagcatgtacttgattgaaaaaagcgggag |
403 |
Q |
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| T |
33116280 |
ttgcatctaatcaaaccgcaatgcttctgtctcttatcactgctgggttgaatgcgtttggttctcttataagcatatatttcatcgataaaaccgggag |
33116379 |
T |
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| Q |
404 |
aaagaaactcgctttaataagtttg |
428 |
Q |
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|||||| || ||||| || |||||| |
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| T |
33116380 |
aaagaagctagctttgattagtttg |
33116404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 184 - 385
Target Start/End: Complemental strand, 21559375 - 21559174
Alignment:
| Q |
184 |
tgaaaaccaaagctgtaaggagaggtttatatgcaggaatgggacttgcaattttccaacaatttgttggaatcaacactgtcatgtactacagtccagc |
283 |
Q |
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||||||||||| | || || |||||||||||||||||| ||||||| ||| |||||||||||||| ||||||||||| || ||||||||||||||| | |
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| T |
21559375 |
tgaaaaccaaaacagttagaagaggtttatatgcaggagtgggactacaaatcttccaacaatttgtcggaatcaacacagtaatgtactacagtccaac |
21559276 |
T |
|
| Q |
284 |
cattattcagttagccggttttgcatccaatcaaacggcacttcttctgtcactcataacatctggactaaatgcatttggttccattttaagcatgtac |
383 |
Q |
| |
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||| |||| |||| ||||||||||| || |||| |||||||||||||| ||| | ||| ||||| | |||||||||||||| ||||| ||||| ||| |
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| T |
21559275 |
catcgttcaactagctggttttgcatcaaacaaaacagcacttcttctgtcgctcgtcacagctggaattaatgcatttggttcgattttgagcatatac |
21559176 |
T |
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| Q |
384 |
tt |
385 |
Q |
| |
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|| |
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| T |
21559175 |
tt |
21559174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 204 - 439
Target Start/End: Complemental strand, 21492670 - 21492435
Alignment:
| Q |
204 |
agaggtttatatgcaggaatgggacttgcaattttccaacaatttgttggaatcaacactgtcatgtactacagtccagccattattcagttagccggtt |
303 |
Q |
| |
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||||||||||||||||| | |||||||| ||||||| |||||| || |||||||| || |||||||||||||| | ||| ||||| | ||||||| |
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| T |
21492670 |
agaggtttatatgcaggtgtaggacttgcgtttttccagcaatttaccggtatcaacacggtaatgtactacagtccttcaattgttcagctggccggtt |
21492571 |
T |
|
| Q |
304 |
ttgcatccaatcaaacggcacttcttctgtcactcataacatctggactaaatgcatttggttccattttaagcatgtacttgattgaaaaaagcgggag |
403 |
Q |
| |
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|||| || || ||| |||||||||||||| || || || ||||| || |||||||| ||||| ||| | ||||| || || || || |||| ||||| |
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| T |
21492570 |
ttgcgtcaaaaagaacagcacttcttctgtctctaatcacttctggcctcaatgcattcggttcaattctgagcatatatttcatcgacaaaactgggag |
21492471 |
T |
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| Q |
404 |
aaagaaactcgctttaataagtttgacaggagttgt |
439 |
Q |
| |
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|||||||| || || || |||||||| || ||||| |
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| T |
21492470 |
gaagaaacttgcattgattagtttgaccggtgttgt |
21492435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 204 - 428
Target Start/End: Complemental strand, 1084232 - 1084008
Alignment:
| Q |
204 |
agaggtttatatgcaggaatgggacttgcaattttccaacaatttgttggaatcaacactgtcatgtactacagtccagccattattcagttagccggtt |
303 |
Q |
| |
|
|||||||| |||||||||||||| ||| ||| |||||||||||||| |||||||| | || ||||||| ||| ||| | ||| |||| |||| |||| |
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| T |
1084232 |
agaggtttgtatgcaggaatgggccttcaaatattccaacaatttgtaggaatcaatatcgtaatgtacttcagcccaactattgttcaactagctggtt |
1084133 |
T |
|
| Q |
304 |
ttgcatccaatcaaacggcacttcttctgtcactcataacatctggactaaatgcatttggttccattttaagcatgtacttgattgaaaaaagcgggag |
403 |
Q |
| |
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||||||| |||||||| ||| | |||||||| || || || |||| | ||| | |||||||| || ||||||| || || ||||| |||| |||||| |
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| T |
1084132 |
ttgcatctaatcaaaccgcaatgcttctgtctcttatcactgctgggttgaatacgtttggttcgcttataagcatatatttcattgataaaaccgggag |
1084033 |
T |
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| Q |
404 |
aaagaaactcgctttaataagtttg |
428 |
Q |
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|||||| || ||||| || |||||| |
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| T |
1084032 |
aaagaagctagctttgattagtttg |
1084008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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