View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11592_low_8 (Length: 532)

Name: NF11592_low_8
Description: NF11592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11592_low_8
NF11592_low_8
[»] chr2 (2 HSPs)
chr2 (1-284)||(5129574-5129857)
chr2 (345-513)||(5129918-5130086)
[»] chr8 (7 HSPs)
chr8 (54-134)||(26762835-26762916)
chr8 (29-136)||(30011761-30011869)
chr8 (87-134)||(39560344-39560391)
chr8 (63-124)||(25467243-25467305)
chr8 (63-124)||(24887739-24887801)
chr8 (63-124)||(25431329-25431391)
chr8 (27-134)||(2301648-2301757)
[»] chr4 (5 HSPs)
chr4 (22-121)||(51048172-51048272)
chr4 (48-129)||(18966004-18966085)
chr4 (90-134)||(6468678-6468722)
chr4 (75-119)||(35656475-35656519)
chr4 (90-130)||(40611987-40612027)
[»] chr1 (1 HSPs)
chr1 (50-119)||(15867624-15867694)
[»] chr6 (2 HSPs)
chr6 (75-136)||(25094711-25094772)
chr6 (90-134)||(31650308-31650352)
[»] chr7 (3 HSPs)
chr7 (75-133)||(5376298-5376356)
chr7 (53-101)||(4624516-4624565)
chr7 (100-136)||(35169988-35170024)
[»] chr5 (1 HSPs)
chr5 (75-136)||(18871002-18871063)
[»] scaffold1396 (1 HSPs)
scaffold1396 (46-129)||(1263-1346)


Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 5129574 - 5129857
Alignment:
Q  1 tcaacaattaatatttgatattatggatttaattcatattcacttttagtgtaaagatttgctacattgtcaat-aatcataatcgtcatatcataaaaa 99  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| ||||||||||||||||    
T  5129574 tcaacaattaatattttatattatggatttaattcatattcacttttagtgtaaagatttgctacattgtcagtcaatcgtaaccgtcatatcataaaaa 5129673  T
Q  100 atgtttgaccttaatcataaatacttctaaagtcacaaaatgaaaacatttttaaaaaatcacttcaaagtatgcaattttatataattttgttcaggaa 199  Q
    |  |||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||    
T  5129674 acatttgaccttaatcataaatacttctaaagtcacacaatgaaaacatttaaaaaaaatcacttcacagtatgcaattttatataattttgttcaggaa 5129773  T
Q  200 aagtgtttcctttctcattgaacttactgcatttcatccatctgctgttcatgtggaactggagtctcatttccagccttaggtg 284  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5129774 aagtg-ttcctttctaattgaacttactgcatttcatccatctgctgttcatgtggaactggagtctcatttccagccttaggtg 5129857  T

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Target: chr2; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 345 - 513
Target Start/End: Original strand, 5129918 - 5130086
Alignment:
Q  345 agataggattcccagactcatcatttaattctacaaaacaaaccaacttatgactatcagtttgtacttctaaagatattgtcccaagaaatgtaagcta 444  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5129918 agataggattcccagactcatcatttaattctacaaaacaaaccaacttatgactatcagtttgtacttctaaagatattgtcccaagaaatataagcta 5130017  T
Q  445 aagtctctattctttaccactgtccactgttgtcgttgacacggtactgatatgcctagcatggagtcc 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5130018 aagtctctattctttaccactgtccactgttgtcgttgacacggtactgatatgcctagcatggagtcc 5130086  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 26762835 - 26762916
Alignment:
Q  54 aagatttgctacattgtcaat-aatcataatcgtcatatcataaaaaatgtttgaccttaatcataaatacttctaaagtca 134  Q
    ||||||| ||| ||||||||| |||||||||| ||| ||||  ||||| ||||||| |||||||||| ||||||||||||||    
T  26762835 aagattttctatattgtcaatcaatcataatcctcagatcagtaaaaacgtttgactttaatcataattacttctaaagtca 26762916  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 30011869 - 30011761
Alignment:
Q  29 ttaattcatattcacttttagtgtaaagatttgctacattgtcaat-aatcataatcgtcatatcataaaaaatgtttgaccttaatcataaatacttct 127  Q
    ||||||||||| |||| | ||| |||| ||||  |||| ||||||| ||||||| | |||||| ||| ||||||||||||| | |||||||| |||||||    
T  30011869 ttaattcatatacactgtcagtttaaacattttttacactgtcaatcaatcatacttgtcataacattaaaaatgtttgacttcaatcataactacttct 30011770  T
Q  128 aaagtcaca 136  Q
    ||| |||||    
T  30011769 aaaatcaca 30011761  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 39560391 - 39560344
Alignment:
Q  87 catatcataaaaaatgtttgaccttaatcataaatacttctaaagtca 134  Q
    |||||||| ||||||||||||| |||||||||| ||||||||||||||    
T  39560391 catatcattaaaaatgtttgactttaatcataactacttctaaagtca 39560344  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 25467243 - 25467305
Alignment:
Q  63 tacattgtcaata-atcataatcgtcatatcataaaaaatgtttgaccttaatcataaatact 124  Q
    ||||||||||||  ||||||| ||||||||||||||||||||||||| | |||||||| ||||    
T  25467243 tacattgtcaatccatcataaccgtcatatcataaaaaatgtttgacttaaatcataactact 25467305  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 124
Target Start/End: Complemental strand, 24887801 - 24887739
Alignment:
Q  63 tacattgtcaat-aatcataatcgtcatatcataaaaaatgtttgaccttaatcataaatact 124  Q
    |||||| ||||| |||||||| |||||||||||||||||| |||||| | |||||||| ||||    
T  24887801 tacattctcaatcaatcataaccgtcatatcataaaaaatatttgacttaaatcataactact 24887739  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 25431329 - 25431391
Alignment:
Q  63 tacattgtcaat-aatcataatcgtcatatcataaaaaatgtttgaccttaatcataaatact 124  Q
    |||||| ||||| |||||||| ||||||||||||| ||||||||||| | |||||||| ||||    
T  25431329 tacattctcaatcaatcataaccgtcatatcataacaaatgtttgacttaaatcataactact 25431391  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 134
Target Start/End: Original strand, 2301648 - 2301757
Alignment:
Q  27 atttaattcatattcacttttagtgtaaagatttgctacattgtcaat-aatcataatcgtcatatcataaaaaatgtttgaccttaatc-ataaatact 124  Q
    ||||||||||||| |||  | ||| ||||||||| |||||||| |||| |||| ||||| ||| ||| | |||||  |||| | |||||| |||||||||    
T  2301648 atttaattcatatacaccgtcagtttaaagattttctacattggcaatcaatcttaatcctcaaatctttaaaaacatttggctttaatcaataaatact 2301747  T
Q  125 tctaaagtca 134  Q
    ||||||||||    
T  2301748 tctaaagtca 2301757  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 51048172 - 51048272
Alignment:
Q  22 tatggatttaattcatattcacttttagtgtaaagatttgctacattgtcaat-aatcataatcgtcatatcataaaaaatgtttgaccttaatcataaa 120  Q
    ||||||||||||||||||||||| | ||| |||||||||  |||| ||||||| ||| || || |||| ||||| ||||| ||||||| || ||||||||    
T  51048172 tatggatttaattcatattcactgtcagtataaagattttatacactgtcaataaataatgattgtcaaatcattaaaaacgtttgacgtttatcataaa 51048271  T
Q  121 t 121  Q
    |    
T  51048272 t 51048272  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 18966085 - 18966004
Alignment:
Q  48 agtgtaaagatttgctacattgtcaata-atcataatcgtcatatcataaaaaatgtttgaccttaatcataaatacttctaa 129  Q
    |||||||||||||  |||||||| |||  ||||||||||||||||||| ||||||||||||| |||||| ||| || ||||||    
T  18966085 agtgtaaagatttt-tacattgttaatcgatcataatcgtcatatcattaaaaatgtttgactttaatcgtaactaattctaa 18966004  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 6468678 - 6468722
Alignment:
Q  90 atcataaaaaatgtttgaccttaatcataaatacttctaaagtca 134  Q
    |||||||||| |||||||| |||||| ||| ||||||||||||||    
T  6468678 atcataaaaactgtttgactttaatcttaattacttctaaagtca 6468722  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 35656519 - 35656475
Alignment:
Q  75 aatcataatcgtcatatcataaaaaatgtttgaccttaatcataa 119  Q
    |||||||||||||| ||||| |||||| |||||| ||||||||||    
T  35656519 aatcataatcgtcacatcattaaaaatatttgacattaatcataa 35656475  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 40612027 - 40611987
Alignment:
Q  90 atcataaaaaatgtttgaccttaatcataaatacttctaaa 130  Q
    |||||| |||||||||||| | |||||||||||||||||||    
T  40612027 atcatacaaaatgtttgacttcaatcataaatacttctaaa 40611987  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 15867694 - 15867624
Alignment:
Q  50 tgtaaagatttgctacattgtcaat-aatcataatcgtcatatcataaaaaatgtttgaccttaatcataa 119  Q
    |||||||||||  ||||  |||||| |||||||||||||||||||| |||| |||||||| ||||||||||    
T  15867694 tgtaaagattttttacaacgtcaatcaatcataatcgtcatatcattaaaactgtttgactttaatcataa 15867624  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 25094772 - 25094711
Alignment:
Q  75 aatcataatcgtcatatcataaaaaatgtttgaccttaatcataaatacttctaaagtcaca 136  Q
    |||||||||||||  ||||| ||| ||||||||| |||||||||| ||||| ||||||||||    
T  25094772 aatcataatcgtctaatcattaaacatgtttgactttaatcataagtacttttaaagtcaca 25094711  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 31650308 - 31650352
Alignment:
Q  90 atcataaaaaatgtttgaccttaatcataaatacttctaaagtca 134  Q
    ||||| ||||||||||||| |||||||||| ||||||||||||||    
T  31650308 atcattaaaaatgtttgactttaatcataactacttctaaagtca 31650352  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 5376298 - 5376356
Alignment:
Q  75 aatcataatcgtcatatcataaaaaatgtttgaccttaatcataaatacttctaaagtc 133  Q
    |||||| ||||||| ||||| ||||| |||||||  ||||||||| |||||||||||||    
T  5376298 aatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtc 5376356  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 4624565 - 4624516
Alignment:
Q  53 aaagatttgctacattgtcaat-aatcataatcgtcatatcataaaaaat 101  Q
    ||||||||| |||||||||||| |||||||||||||| ||||| ||||||    
T  4624565 aaagatttgttacattgtcaatcaatcataatcgtcagatcatcaaaaat 4624516  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 35169988 - 35170024
Alignment:
Q  100 atgtttgaccttaatcataaatacttctaaagtcaca 136  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  35169988 atgtttgactttaatcataactacttctaaagtcaca 35170024  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 18871002 - 18871063
Alignment:
Q  75 aatcataatcgtcatatcataaaaaatgtttgaccttaatcataaatacttctaaagtcaca 136  Q
    |||| |||| |||| ||||| ||| | ||||||||||||| |||| ||||||||||||||||    
T  18871002 aatcgtaattgtcagatcattaaacacgtttgaccttaatgataactacttctaaagtcaca 18871063  T

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Target: scaffold1396 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1396
Description:

Target: scaffold1396; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 129
Target Start/End: Original strand, 1263 - 1346
Alignment:
Q  46 ttagtgtaaagatttgctacattgtcaat-aatcataatcgtcatatcataaaaaatgtttgaccttaatcataaatacttctaa 129  Q
    |||||||||||||||  ||| |||||||| ||||||||| |||||||||| ||| | ||||||| || ||||||| || ||||||    
T  1263 ttagtgtaaagattttttacgttgtcaatcaatcataatggtcatatcattaaaca-gtttgacatttatcataactatttctaa 1346  T

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