View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11592_low_9 (Length: 507)
Name: NF11592_low_9
Description: NF11592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11592_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 1253342 - 1253007
Alignment:
| Q |
20 |
attggctgctacttcattaaaaacaattttatgtaacttttatttgtatggtatgctagttatgttctaaagttactatgcttgtcgtttgcatgtgtca |
119 |
Q |
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| T |
1253342 |
attggctgctacttcattaaaaacaattttatgtaacttttatttgtatggtatgctagttatgttctaaagttactatgcttgtcgtttgcatgtgtca |
1253243 |
T |
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| Q |
120 |
tgtcnnnnnnn-------------cgggtcatttggtttcattgaaaacaatgatgggaactaagaaaatgacaacatgaagcattagagtccaataatt |
206 |
Q |
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| T |
1253242 |
tgtctttttttttttttttttttccgggtcatttggtttcattgaaaacaatgatgggaactaagaaaatgacaacatgaagcattagagtccaataatt |
1253143 |
T |
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| Q |
207 |
tgaaaataacatataaacaagtatgtaaatatgcaacattttggaatttctatgcgnnnnnnnctatgtaaccaatcgtttgaaaatttcttctatatca |
306 |
Q |
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| T |
1253142 |
tgaaaataacatataaacaagtatgtaaatattcaacattttggaatttctatgcgaaaaaaactatgtaaccaatcgtttgaaaatttcttgtatatca |
1253043 |
T |
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| Q |
307 |
caaaagactgcattttagcacctctgtgggtgtgag |
342 |
Q |
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| T |
1253042 |
caaaagactgcattttagcacctctgtaggtgtgag |
1253007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 397 - 495
Target Start/End: Complemental strand, 1252953 - 1252855
Alignment:
| Q |
397 |
ccattgtattccttgttttgaaagaattatttgatgttaactctgttagtcataagttaacagttagaaaaccttagtttgtctcaaaaacaacaattc |
495 |
Q |
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| T |
1252953 |
ccattgtattccttgttttgaaagaattatttgatgttaactctgttagtcataagttaacagttggaaaaccttagtttgtctcaaaaacaacaattc |
1252855 |
T |
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