View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11593_high_2 (Length: 414)
Name: NF11593_high_2
Description: NF11593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11593_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 13152947 - 13152551
Alignment:
| Q |
1 |
tgaggctatatgatccaaaccaagctgctcttgaagcacttagaaattctggcattgagcttatgttaggtgtgccaaattctgatcttcaaaacattgc |
100 |
Q |
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| T |
13152947 |
tgaggctatatgatccaaaccaagctgctcttgaagcacttagaaattctggcattgagcttatgttaggtgtgccaaattctgatcttcaaaacattgc |
13152848 |
T |
|
| Q |
101 |
taacaacaatgacattgcaattcaatgggtacnnnnnnntgtactaaacttctaccctagtgtcaaaatcaaatacatcgcggttggtaatgaagttaac |
200 |
Q |
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| T |
13152847 |
taccaacaatgacattgcaattcaatgggtacaaaaaaatgtactaaacttctaccctagtgtcaaaatcaaatacatcgcggttggtaatgaagttaac |
13152748 |
T |
|
| Q |
201 |
ccagttggtggctcttctcaattcgcaaaatttgttcttccggcaatccaaaacatatatcaagcaataagagcgaaaaatcttcacgatcaaatcaagg |
300 |
Q |
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| T |
13152747 |
ccagttggtggctcttctcaattcgcaaaatttgttcttccggcaatccaaaacatatatcaagcaataagagcgaaaaatctgcacgatcaaatcaagg |
13152648 |
T |
|
| Q |
301 |
tttcaacggctattgacatgaccatgataggaacttcgtacccgccgtctaaaggttcatttagaagcgatgtgaggtcatatttggatccaattat |
397 |
Q |
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| T |
13152647 |
tttcaacggctattgacatgaccatgataggaacttcgtacccgccgtctaaaggttcatttagaagcgatgtgaggtcatatttggatccaattat |
13152551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 13146183 - 13145787
Alignment:
| Q |
1 |
tgaggctatatgatccaaaccaagctgctcttgaagcacttagaaattctggcattgagcttatgttaggtgtgccaaattctgatcttcaaaacattgc |
100 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||| ||||| ||||||||||||||||||||||| || || ||||||||||||||||| |
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| T |
13146183 |
tgaggctatatgatccaaacccagatgctcttgaagcacttagaaactctggtattgagcttatgttaggtgtgcctaactccgatcttcaaaacattgc |
13146084 |
T |
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| Q |
101 |
taacaacaatgacattgcaattcaatgggtacnnnnnnntgtactaaacttctaccctagtgtcaaaatcaaatacatcgcggttggtaatgaagttaac |
200 |
Q |
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||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
13146083 |
taacaacaaagacattgcaaatcaatgggtacaaaaaaatgtactaaacttctaccctagtgttaaaatcaaatacatcgcggtcggtaatgaagttaat |
13145984 |
T |
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| Q |
201 |
ccagttggtggctcttctcaattcgcaaaatttgttcttccggcaatccaaaacatatatcaagcaataagagcgaaaaatcttcacgatcaaatcaagg |
300 |
Q |
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| T |
13145983 |
ccagttggcggctcttctcaatttgcaaaattcgtccttccggcaatccaaaacatataccaagcaataagagcgaaaaattttcaagatcaaatcaagg |
13145884 |
T |
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| Q |
301 |
tttcaacggctattgacatgaccatgataggaacttcgtacccgccgtctaaaggttcatttagaagcgatgtgaggtcatatttggatccaattat |
397 |
Q |
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| T |
13145883 |
tttcaacggctattgacatgaccatgataggaacttcgtacccgccgtctaaaggttcatttagaagcgatgtgaggtcatatttggatccaattat |
13145787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 147 - 382
Target Start/End: Original strand, 13160437 - 13160672
Alignment:
| Q |
147 |
aacttctaccctagtgtcaaaatcaaatacatcgcggttggtaatgaagttaacccagttggtggctcttctcaattcgcaaaatttgttcttccggcaa |
246 |
Q |
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||||||| ||||||||||||||||| || || || |||||||||||||| | |||||||| ||||||||| | || ||| |||||| || || | |
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| T |
13160437 |
aacttctggcctagtgtcaaaatcaagtatattgcagttggtaatgaagtgagtccagttggaggctcttcttggctagcccaatatgttctacctgcca |
13160536 |
T |
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| Q |
247 |
tccaaaacatatatcaagcaataagagcgaaaaatcttcacgatcaaatcaaggtttcaacggctattgacatgaccatgataggaacttcgtacccgcc |
346 |
Q |
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|||||| ||||||||||| |||||||| || |||||| |||||||||||||||||||| ||||||||||||||| | || |||| ||| | ||| || |
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| T |
13160537 |
cccaaaatatatatcaagcgataagagctcaaggtcttcatgatcaaatcaaggtttcaaccgctattgacatgacccttattggaaattcattccctcc |
13160636 |
T |
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| Q |
347 |
gtctaaaggttcatttagaagcgatgtgaggtcata |
382 |
Q |
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||||||||||| ||||||| ||||| |||||||| |
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| T |
13160637 |
atctaaaggttcttttagaaatgatgttaggtcata |
13160672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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