View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11593_high_3 (Length: 348)
Name: NF11593_high_3
Description: NF11593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11593_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 494108 - 494364
Alignment:
| Q |
1 |
tggtgcagtttgtattatttgatgaacattgaattggatctgctggaggagttgaaattactccatatattataaataggaagataaaaatagtggactt |
100 |
Q |
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| T |
494108 |
tggtgcagtttgtattatttgatgaacattgaattggatctgctggaggagttgaaattactccatatattataaataggaagataaaaatagtggactt |
494207 |
T |
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| Q |
101 |
gaattctagttttctcatgatattagagaatatcattaacattgtctagctatagttgatatt--ttatctatctctatgatcttctatgtgctatttat |
198 |
Q |
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| T |
494208 |
gaattctagttttctcatgatattagagaatatcattaacattgtctagctatagttgatatttcttatctatctctatgatcttctatgtgctatttat |
494307 |
T |
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| Q |
199 |
aaaacgaatgtaatattgtggtccatgtattgcttcaagaaaataatattctaaagt |
255 |
Q |
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| T |
494308 |
aaaacgaatgtaatattgttgtccatgtcttgcttaaagaaaatagtattctaaagt |
494364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 49013448 - 49013347
Alignment:
| Q |
1 |
tggtgcagtttgtattatttgatgaacattgaattggatctgctggaggagttgaaattactccatatattataaataggaagataaaaatagtggactt |
100 |
Q |
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||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||| |||||||| |||| || || |||||||| | |||| |||| |
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| T |
49013448 |
tggtgcagtttgtgttatttgatgaacatttaattggatcttctggaggagttgaaatcactccatagattacaaggagaaagataaagagagtgaactt |
49013349 |
T |
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| Q |
101 |
ga |
102 |
Q |
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|| |
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| T |
49013348 |
ga |
49013347 |
T |
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