View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11593_low_1 (Length: 661)
Name: NF11593_low_1
Description: NF11593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11593_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 1 - 644
Target Start/End: Complemental strand, 15586689 - 15586032
Alignment:
| Q |
1 |
tcatgcaaaaagggagatgtacaaatgcttcttggttggttggnnnnnnnngtgaggaagaaaccaaccaagaagagggagacttgagaggatgcaatca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15586689 |
tcatgcaaaaagggagatgtacaaatgcttcttggttggttggttttttttgtgaggaagaaaccaaccaagaagagggagacttgagaggatgcaatca |
15586590 |
T |
|
| Q |
101 |
aaaatctcaaaagtaaagaattggagagaagtggtttttgagcatccacaattgagaacaaattaaaaccaatagctcaacgnnnnnnnaggtgaaagtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
15586589 |
aaaatctcaaaagtaaagaattggagagaagtggtttttgagcatccacaattgagaacaaattaaaaccaatagctcaacgtttttttaggtgaaagtc |
15586490 |
T |
|
| Q |
201 |
tagataaacaaacactacaaattttcatgctatatttgggtacaatgtttttggaatagctttttactaatgaaagcacgagaaaaaaggttgatgtaaa |
300 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15586489 |
tagataaacaaacactacaaatttttatgctatatttgggtacaatgtttttggaatagctttttactaatgaaagcacgagaaaaaaggttgatgtaaa |
15586390 |
T |
|
| Q |
301 |
gataattgatgaaccataaaaaacctaaga--------------gctttgtgttttgtagttaacannnnnnnnnnnnaacttaattaggatatgtgttt |
386 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
15586389 |
gataattgatgaaccataaaaaacctaagagaatcaatagttaggctttgtgttttgtagttaacatttttcttttttaacttaattaggatatgtgttt |
15586290 |
T |
|
| Q |
387 |
aattggatttatggtaagtgtctcgttttattatgtcatatatgttttgtcaatgtttaatgccccaataattgaaatttctatactagcttgtattcag |
486 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15586289 |
aattggatttattggaagtgtctcgttttattatgtcatatatgttttgtcaatgtttaatgccccaataattgaaatttctatactagcttgtattcag |
15586190 |
T |
|
| Q |
487 |
aaacatagttgttgcattgcatggtgttaatataggactgaagtagttttctcaaaacaattttggccttcgtgtgatagttgtaatcattgtgggaagt |
586 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
15586189 |
aaacatagttggtgcattgcatggtgttaatataggactgaagtagttttctcaaaacaattttggcctttgtgtgatagttgtattcattgtgggaagt |
15586090 |
T |
|
| Q |
587 |
tgtttcctttggatattggaagaccagtcttgagggtgaaattttttagagggacggt |
644 |
Q |
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||||||||||| | ||||| ||| ||||||||||||||||||||||||||||| |||| |
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| T |
15586089 |
tgtttcctttgaacattgggagaacagtcttgagggtgaaattttttagaggggcggt |
15586032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 574 - 631
Target Start/End: Original strand, 11110594 - 11110651
Alignment:
| Q |
574 |
cattgtgggaagttgtttcctttggatattggaagaccagtcttgagggtgaaatttt |
631 |
Q |
| |
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|||||| ||| ||||||||||||| | ||||| |||||||| ||| |||||||||||| |
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| T |
11110594 |
cattgttggaggttgtttcctttgaacattgggagaccagtgttgcgggtgaaatttt |
11110651 |
T |
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