View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11593_low_4 (Length: 241)
Name: NF11593_low_4
Description: NF11593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11593_low_4 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 9161640 - 9161875
Alignment:
| Q |
1 |
tctcggttaattgatgagtttgcatatactctggatctaggtatccaagagttccttgcaccattgttgctatctcggtttgatcaagtggaaccaacct |
100 |
Q |
| |
|
|||| |||| |||||| |||||||||||||| ||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9161640 |
tctctgttagttgatgtgtttgcatatactccggatctaagtaaccaagagttccttgtaccattgttgctatctcggtttgatcaagtggaaccaacct |
9161739 |
T |
|
| Q |
101 |
cgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaataataggtattgatgcagatgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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|
| T |
9161740 |
cgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtactcttaacatctctatggataataggtattgatgcagatgaa |
9161839 |
T |
|
| Q |
201 |
tgtaaatacgataaagctccggctgtctctgctgct |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
9161840 |
tgtaaatacgataaagctccggctgtctctgctgct |
9161875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 9155728 - 9155963
Alignment:
| Q |
1 |
tctcggttaattgatgagtttgcatatactctggatctaggtatccaagagttccttgcaccattgttgctatctcggtttgatcaagtggaaccaacct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
9155728 |
tctcggttaattgatgagtttgcatatactctggatctaggtatccaagagttccttgaaccattgttgctatctcggtttgatcaagtggaactaacct |
9155827 |
T |
|
| Q |
101 |
cgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaataataggtattgatgcagatgaa |
200 |
Q |
| |
|
||||||||||||||| |||||||| || ||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| |
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|
| T |
9155828 |
cgaagctccaaaatcggaaactttcgctgtgtaattgtcatccaagagaatgttggtacttttgacatctctatggataatcggtattgatgcagatgaa |
9155927 |
T |
|
| Q |
201 |
tgtaaatacgataaagctccggctgtctctgctgct |
236 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9155928 |
tgtagatacgataaagctccggctgtctctgctgct |
9155963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 3 - 236
Target Start/End: Original strand, 9170468 - 9170701
Alignment:
| Q |
3 |
tcggttaattgatgagtttgcatatactctggatctaggtatccaagagttccttgcaccattgttgctatctcggtttgatcaagtggaaccaacctcg |
102 |
Q |
| |
|
|||||||||| ||| |||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || | |
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|
| T |
9170468 |
tcggttaatttatgtgtttgcatatactcgggatctaagtatccaagtgttccttgcaccattgttgctatctctgtttgatcaagtggaaccaatcttg |
9170567 |
T |
|
| Q |
103 |
aagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaataataggtattgatgcagatgaatg |
202 |
Q |
| |
|
||||||| || || |||||||| ||| ||||||||||||| ||||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||| |
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|
| T |
9170568 |
aagctccgaagtcggaaactttggcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatggataattggaattgatgcagatgaatg |
9170667 |
T |
|
| Q |
203 |
taaatacgataaagctccggctgtctctgctgct |
236 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||| |
|
|
| T |
9170668 |
tagatacgataaagctccagctgtctctgctgct |
9170701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 3 - 236
Target Start/End: Original strand, 9218551 - 9218784
Alignment:
| Q |
3 |
tcggttaattgatgagtttgcatatactctggatctaggtatccaagagttccttgcaccattgttgctatctcggtttgatcaagtggaaccaacctcg |
102 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || | |
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|
| T |
9218551 |
tcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttccttgtaccattgtcgctatctcggtttgatcaagtggaaccaatcttg |
9218650 |
T |
|
| Q |
103 |
aagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaataataggtattgatgcagatgaatg |
202 |
Q |
| |
|
||||||| || || |||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||| ||||| || |||||||||| |||||| |
|
|
| T |
9218651 |
aagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatggataattggaattgatgcagctgaatg |
9218750 |
T |
|
| Q |
203 |
taaatacgataaagctccggctgtctctgctgct |
236 |
Q |
| |
|
|| ||| |||||||| || ||||||||||||||| |
|
|
| T |
9218751 |
tagatatgataaagcaccagctgtctctgctgct |
9218784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 9118812 - 9118577
Alignment:
| Q |
1 |
tctcggttaattgatgagtttgcatatactctggatctaggtatccaagagttccttgcaccattgttgctatctcggtttgatcaagtggaaccaacct |
100 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| |||| ||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
9118812 |
tctcggttaattgatgcgtttgcatgtactctgggtctaagtatccaagtgttccttgtaccactgttgctatctcggtttgatcaagtggaaccaattt |
9118713 |
T |
|
| Q |
101 |
cgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaataataggtattgatgcagatgaa |
200 |
Q |
| |
|
|||||||| ||||| |||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||| ||||| || | ||||||||||||| |
|
|
| T |
9118712 |
ggaagctccgaaatcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatggataattggaaatgatgcagatgaa |
9118613 |
T |
|
| Q |
201 |
tgtaaatacgataaagctccggctgtctctgctgct |
236 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
9118612 |
tgtagatacgataaagctccagctgtctctgctgct |
9118577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 9200033 - 9200268
Alignment:
| Q |
1 |
tctcggttaattgatgagtttgcatatactctggatctaggtatccaagagttccttgcaccattgttgctatctcggtttgatcaagtggaaccaacct |
100 |
Q |
| |
|
||||||||| |||||| |||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
9200033 |
tctcggttagttgatgtgtttgcatatactcgggatctaagtatccaagtgttccttgcaccattgttgctatctctgtttgatcaagtggaaccaatct |
9200132 |
T |
|
| Q |
101 |
cgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaataataggtattgatgcagatgaa |
200 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| || ||||| || |||||||||| |||| |
|
|
| T |
9200133 |
ggaagctccaaagtcagaaacttttgcggtgtaattgtcatccaagagaatgttggtactcttaacatctctgtggataattggaattgatgcagctgaa |
9200232 |
T |
|
| Q |
201 |
tgtaaatacgataaagctccggctgtctctgctgct |
236 |
Q |
| |
|
|||| ||| ||||||||||| |||||||| |||||| |
|
|
| T |
9200233 |
tgtagatatgataaagctccagctgtctccgctgct |
9200268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 9229434 - 9229653
Alignment:
| Q |
1 |
tctcggttaattgatgagtttgcatatactctggatctaggtatccaagagttccttgcaccattgttgctatctcggtttgatcaagtggaaccaacct |
100 |
Q |
| |
|
|||| |||| ||| || ||||||||||| |||||||||| || |||||||||||||| |||| || |||||| || ||||||||||||||||| || |
|
|
| T |
9229434 |
tctctgttagttggtgtgtttgcatatattctggatctaaatagccaagagttccttgtaccacagtggctatcatagtatgatcaagtggaaccaatct |
9229533 |
T |
|
| Q |
101 |
cgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaataataggtattgatgcagatgaa |
200 |
Q |
| |
|
||||| ||||||||||| ||||||||| ||||||||||||| ||||||||||||| |||||| ||||||||||| ||||| |||| |||||||||||| |
|
|
| T |
9229534 |
tgaagcaccaaaatcagacacttttgcagtgtaattgtcatccaagagaatgttggcacttttgacatctctatggataattggtaaggatgcagatgaa |
9229633 |
T |
|
| Q |
201 |
tgtaaatacgataaagctcc |
220 |
Q |
| |
|
|||| ||| ||||||||||| |
|
|
| T |
9229634 |
tgtagatatgataaagctcc |
9229653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 1868807 - 1868607
Alignment:
| Q |
18 |
gtttgcatatactctggatctaggtatccaagagttccttgcaccattgttgctatctcggtttgatcaagtggaaccaacctcgaagctccaaaatcag |
117 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| |||||||||||||||||| ||||| || |||||||||||||||||||| || |||||||||||||| | |
|
|
| T |
1868807 |
gtttgcatatactctggatctaagtagccaatagttccttgcaccattgtggctatttcagtttgatcaagtggaaccaatcttgaagctccaaaatccg |
1868708 |
T |
|
| Q |
118 |
aaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaataataggtattgatgcagatgaatgtaaatacgataaagc |
217 |
Q |
| |
|
| ||||| || ||| | ||||||||||||||| ||| || ||||||||||| || || |||||||| ||| ||||||||| ||| || ||||| |
|
|
| T |
1868707 |
atactttggcggtgttggttctatctaagagaatgttatcactcttgacatctctatggatgatgggtattgaggcatatgaatgtagatatgacaaagc |
1868608 |
T |
|
| Q |
218 |
t |
218 |
Q |
| |
|
| |
|
|
| T |
1868607 |
t |
1868607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 1857209 - 1857023
Alignment:
| Q |
18 |
gtttgcatatactctggatctaggtatccaagagttccttgcaccattgttgctatctcggtttgatcaagtggaaccaacctcgaagctccaaaatcag |
117 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| |||||||||||||||||| ||||| || |||||||||||||||||||| || |||||||||||||| | |
|
|
| T |
1857209 |
gtttgcatatactctggatctaagtagccaatagttccttgcaccattgtggctatttcagtttgatcaagtggaaccaatcttgaagctccaaaatccg |
1857110 |
T |
|
| Q |
118 |
aaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaataataggtattgatgcagatgaatgta |
204 |
Q |
| |
|
| ||||| || ||| | |||||||||||||||| ||| || ||||||||||| || || ||| |||| ||| ||||||||| |
|
|
| T |
1857109 |
acactttggcggtgttggttccatctaagagaatgttatcactcttgacatctctatggatgatgggtgttgaggcatatgaatgta |
1857023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 1815835 - 1816019
Alignment:
| Q |
18 |
gtttgcatatactctggatctaggtatccaagagttccttgcaccattgttgctatctcggtttgatcaagtggaaccaacctcgaagctccaaaatcag |
117 |
Q |
| |
|
|||||||||||||||||||| | ||| |||| |||||||||||||||||| |||| || |||||||||||||||| |||||| || ||||||||||| | |
|
|
| T |
1815835 |
gtttgcatatactctggatccaagtagccaatagttccttgcaccattgtggctacttcagtttgatcaagtggaatcaaccttgatgctccaaaatctg |
1815934 |
T |
|
| Q |
118 |
aaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaataataggtattgatgcagatgaatg |
202 |
Q |
| |
|
| ||||| || ||| | |||||||||||||||| | ||| || ||||||||||| ||||| |||||||| |||| |||||| |
|
|
| T |
1815935 |
acactttagcggtgttggttccatctaagagaatgttagcactcttgacatctctatggataatgggtattgaggcagctgaatg |
1816019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 1843198 - 1843012
Alignment:
| Q |
18 |
gtttgcatatactctggatctaggtatccaagagttccttgcaccattgttgctatctcggtttgatcaagtggaaccaacctcgaagctccaaaatcag |
117 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| |||||||||||||||||| ||||| || |||||||||| ||||||||| || |||||||||||||| | |
|
|
| T |
1843198 |
gtttgcatatactctggatctaagtagccaatagttccttgcaccattgtggctatttcagtttgatcaattggaaccaatcttgaagctccaaaatctg |
1843099 |
T |
|
| Q |
118 |
aaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaataataggtattgatgcagatgaatgta |
204 |
Q |
| |
|
| ||||| || ||| | ||||||||||||||| ||| || ||||||||||| || || |||||||| ||| ||||||||| |
|
|
| T |
1843098 |
atactttggctgtgttggttctatctaagagaatgttatcactcttgacatctctatggattattggtattgaggcatatgaatgta |
1843012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 178
Target Start/End: Complemental strand, 40602256 - 40602159
Alignment:
| Q |
81 |
tgatcaagtggaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaat |
178 |
Q |
| |
|
|||||||| ||||| | | | |||||||||||||||||||| |||||| || |||| |||||| ||| ||||| ||| ||| | |||||||||||| |
|
|
| T |
40602256 |
tgatcaagaggaacaatctttgaagctccaaaatcagaaacctttgcaatgagattgccatctaggaggatgtttgtagattttatatctctatgaat |
40602159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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