View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11594_high_1 (Length: 536)
Name: NF11594_high_1
Description: NF11594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11594_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 15 - 526
Target Start/End: Original strand, 49569517 - 49570026
Alignment:
| Q |
15 |
catcaaagacgagtatatagtctatggccttttatgcaacacaaaccccacacagagaataggtcattcatcctcacctaacacacacggaacagaaaag |
114 |
Q |
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| T |
49569517 |
catcaaagacgagtatatagtctatggccttttatgcaacacaaaccccacacagagaataggtcattcatcctcacctaacacacacggaacagaaaag |
49569616 |
T |
|
| Q |
115 |
taaacaatgttatcggcggaagaaaatggaataagtggtgttggaaattattagtgttgtcaatacaaacaatagcagcttggaggtactcttggtgttc |
214 |
Q |
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| T |
49569617 |
taaacaatgttatcggcggaagaaaatggaataagtggtgttggaaattattagtgttgtcaatacaaacaatagtagcttggaggtactcttggagttc |
49569716 |
T |
|
| Q |
215 |
aaatattatacaatgatgttttgtttaattattttgtcttaatcatcattattatttcaaagaaaatggacaccgataatgaaaattatatcagttagta |
314 |
Q |
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| T |
49569717 |
aaatattatacaatgatgttttgtttaattattttgtcttaatcatcattattatttctaagaaaatggacaccgataatgaaaattatatcaattagta |
49569816 |
T |
|
| Q |
315 |
aataaagtatgatcaaatattgttttagttcaaattcgaatttgattctcttaaatgaatgatttcgtagctcatttaccacttgaatttaatcacccaa |
414 |
Q |
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| T |
49569817 |
aataaagtatgttcaaatattgttttagttcaaattcgaatttgattctcttaaatgaatgatttcgtagctcatttaccacttgaatttaatcacccaa |
49569916 |
T |
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| Q |
415 |
ttattttttattggttgaaattgagaggttaatgtggcccaatttggttgatcccaacatttgcgccaataactcaaagtggcaagcacatttcaagtta |
514 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49569917 |
tta--ttttattggttgaaattgagaggttaatgtggcccaatttggttgatcccaacatttgcgccaataactcgaagtggcaagcacatttcaagtta |
49570014 |
T |
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| Q |
515 |
ttaccatctctg |
526 |
Q |
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| T |
49570015 |
ttaccatctctg |
49570026 |
T |
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