View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11594_high_13 (Length: 260)
Name: NF11594_high_13
Description: NF11594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11594_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 36724378 - 36724252
Alignment:
| Q |
14 |
tggacatcagaccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaattta |
113 |
Q |
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| T |
36724378 |
tggacatcagaccttcaatttgataatacagatttttctctagactctgtgaaggatgtggatgctcttagaacaagcatataagatagtagtgaattta |
36724279 |
T |
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| Q |
114 |
gatgcattatagatgcttgtagacagt |
140 |
Q |
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| T |
36724278 |
gatgcattatagatgcttgtagacagt |
36724252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 127 - 253
Target Start/End: Complemental strand, 36723895 - 36723769
Alignment:
| Q |
127 |
tgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaataaagtcaggctaatgaggttgctcatgagttagctcagatagtcc |
226 |
Q |
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| T |
36723895 |
tgcttgtagacagttatttcatagtagatttcaaaactcttaagttgagtttaatagagtcagactaatgggattgctcacgagttagctcagatagtcc |
36723796 |
T |
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| Q |
227 |
cacataatactaactcccacacctatg |
253 |
Q |
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| T |
36723795 |
cacataatactagctctcacacctatg |
36723769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 712145 - 712314
Alignment:
| Q |
13 |
atggacatcagaccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaattt |
112 |
Q |
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| T |
712145 |
atggacatcataccttcaatttgataatgtagattttgctctagactctaagaaggttgtggatgcttttagaacatgtgtagaagatagttgtgaattt |
712244 |
T |
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| Q |
113 |
agatgcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata |
182 |
Q |
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| T |
712245 |
ggatgtattatacttgcatgtagatagttgtttcaaaatagattttaaaactctcatgttgagtttaata |
712314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 717356 - 717577
Alignment:
| Q |
14 |
tggacatcagaccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaattta |
113 |
Q |
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| T |
717356 |
tggacatcacaccttcaatttgataatgtagatttagctctagactctaagaaggttgttgatgcttttagaagatgtgtaggagatagtagtgaatttg |
717455 |
T |
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| Q |
114 |
gatgcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata-aagtcaggctaatgaggttgctcatgagtt |
212 |
Q |
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| T |
717456 |
gatgtattatagttgaatgtagacaattattccaaagtagatttcaaaactctcatgttgagtttaataggagacaagctaatgggatcacttacgagtt |
717555 |
T |
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| Q |
213 |
agctcagatagtcccacataat |
234 |
Q |
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| T |
717556 |
agctcatatagccccacataat |
717577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 182
Target Start/End: Original strand, 14541080 - 14541248
Alignment:
| Q |
14 |
tggacatcagaccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaattta |
113 |
Q |
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||||||||| ||||||||||||||||| | ||||||||||||||| | ||| |||||||||| |||||||| || |||||||| || |||||| |
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| T |
14541080 |
tggacatcataccttcaatttgataatgtatatttttctctagactcttagaagattgtggatgcttttagaacatatgtagaagataatagtaaattta |
14541179 |
T |
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| Q |
114 |
gatgcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata |
182 |
Q |
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| T |
14541180 |
gatgtattatagatgtttgtagacaagtgtttcaaagtaattttaaaaactctcgtattgagtttaata |
14541248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 2087573 - 2087537
Alignment:
| Q |
13 |
atggacatcagaccttcaatttgataatacagatttt |
49 |
Q |
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| T |
2087573 |
atggacatcagaccttcaatttgataaaatagatttt |
2087537 |
T |
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