View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11594_low_11 (Length: 321)
Name: NF11594_low_11
Description: NF11594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11594_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 20 - 309
Target Start/End: Original strand, 46735714 - 46736003
Alignment:
| Q |
20 |
ggctgattatggaagtgttatattttatgattatcactcacgtgactaagaaattggaactctatttcaataatttgctttaatcttggcgttaaactat |
119 |
Q |
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| T |
46735714 |
ggctgattatggaagtgttatattctatgattatcactcacgtgactaagaaattggaactctagttcaataatttgctttaatcttggcgttaaactat |
46735813 |
T |
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| Q |
120 |
gtgcaggttataaatggtaagccttacaacagaagctgtgatgtctacagctttggcatttgcttgtgggaaatttactgttgcgacatgccttatatga |
219 |
Q |
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| T |
46735814 |
gtgcaggttatatgtggtaagccttacaacagaagctgtgatgtctacagctttggcatttgcttgtgggaaatttactgctgcgacatgccttatatga |
46735913 |
T |
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| Q |
220 |
atctaagctttgctgatgcgtcagctgcggttgctgataaggtcagtttatacaatgaaccatgaactctttctatctaccctcatattc |
309 |
Q |
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| T |
46735914 |
atctaagctttgctgatgcgtcagctgcggttgctgataaggtcagtttatacaatgaaccatgaactctttctatctaccctcatattc |
46736003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 19409724 - 19409586
Alignment:
| Q |
20 |
ggctgattatggaagtgttatattttatgattatcactcacgtgactaagaaattggaactctatttcaataatttgctttaatcttggcgttaaactat |
119 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||| || |||||||||||| ||| |
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| T |
19409724 |
ggctgattatggaagtgttatattttatgaatatcactcacatgactaagaaattggaacactatttcaataatttgcttgaaacttggcgttaaaatat |
19409625 |
T |
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| Q |
120 |
gtgcaggttataaatggtaagccttacaacagaagctgt |
158 |
Q |
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| T |
19409624 |
gtgcaggttataaatagtaggccttacaacagaagctgt |
19409586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 19409584 - 19409532
Alignment:
| Q |
256 |
ataaggtcagtttatacaatgaaccatgaactctttctatctaccctcatatt |
308 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
19409584 |
ataaggtctgtttacacaatgaaccatgaactctttctatctatgctcatatt |
19409532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 237
Target Start/End: Original strand, 985860 - 985964
Alignment:
| Q |
133 |
atggtaagccttacaacagaagctgtgatgtctacagctttggcatttgcttgtgggaaatttactgttgcgacatgccttatatgaatctaagctttgc |
232 |
Q |
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||||||| ||||||||||| | |||||||| |||||||||||||||||||||||||||||||| || || || ||||||||| ||||||||||||| |
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| T |
985860 |
atggtaaaccttacaacaggacatgtgatgtatacagctttggcatttgcttgtgggaaatttattgctgtgatatgccttatccagatctaagctttgc |
985959 |
T |
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| Q |
233 |
tgatg |
237 |
Q |
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||||| |
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| T |
985960 |
tgatg |
985964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 308
Target Start/End: Original strand, 20428590 - 20428621
Alignment:
| Q |
277 |
aaccatgaactctttctatctaccctcatatt |
308 |
Q |
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| T |
20428590 |
aaccatgaactctttctatctaccctcatatt |
20428621 |
T |
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