View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11594_low_12 (Length: 320)

Name: NF11594_low_12
Description: NF11594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11594_low_12
NF11594_low_12
[»] chr2 (1 HSPs)
chr2 (12-302)||(41095429-41095720)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 302
Target Start/End: Complemental strand, 41095720 - 41095429
Alignment:
Q  12 atgaatgttaataaaagttggtaaattaataaacaagttatannnnnnnnn---gagggacaataacaagttatatgttgatcgaaagtttattatggtc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||| |||||||||||||    
T  41095720 atgaatgttaataaaagttggtaaattaataaacaagttatattttttttttttgagggacaataacaagttatatgttgatcgaacgtttattatggtc 41095621  T
Q  109 attctatatgatttacacatgattgtggtgtgattatcatgtgaagaccaacatttcatatatgcaacgatgtgtggatcttgttcaaagttatctcgat 208  Q
    |||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41095620 attctatatgatttaca--tgattgtggtgtgattatcacgtgaagaccaacatttcatatatgcaacgatgtgtggatcttgctcaaagttatctcgat 41095523  T
Q  209 cgatgtaatgccagaaactaggttgggtgcatccaacttggatgtattactagcattagtggcaacaacttaaacattattactagcatgagtt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41095522 cgatgtaatgccagaaactaggttgggtgcatccaacttggatgtattactagcattagtggcaacaacttaaacattattactagcatgagtt 41095429  T

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