View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11594_low_13 (Length: 310)
Name: NF11594_low_13
Description: NF11594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11594_low_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 14 - 310
Target Start/End: Complemental strand, 53042991 - 53042695
Alignment:
| Q |
14 |
gaacctataaccaatataaatatttaatcaaaaggtagaaactagcgtttatatatgtgtgattgtctatactaataatgtgcaagtctcaaaccttaat |
113 |
Q |
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| T |
53042991 |
gaacctataaccaatataaatatttaatcaaaaggtagaaactagcgtttatatatgtgtgattgtctatactaataatgtgcaagtctcaaacctcaat |
53042892 |
T |
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| Q |
114 |
gaatcaataacaggggaataatatcaaacttgcctctttgacatacacaacatgtttccctttgcagacaaacaaccgtgtcttatgttcttcagcttca |
213 |
Q |
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| T |
53042891 |
gaatcaataacaggggaataatatcaaacttgcctctttgacatacacaacatgtttccctttgcagacaaacaaccgtgtcttatgttcttcagcttca |
53042792 |
T |
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| Q |
214 |
acatgcttaaaaccagaggcagctccaccttcttgtggtataatacatggtttgaaatatgacaggaacttctgagtttcatgaccctgtacttcac |
310 |
Q |
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| T |
53042791 |
acatgcttaaaaccagaggcagctccaccttcttgtggtataatacatggtttgaaatatgacaggaacttctgagtttcatgaccctgtacttcac |
53042695 |
T |
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Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 139 - 308
Target Start/End: Original strand, 15965023 - 15965192
Alignment:
| Q |
139 |
aaacttgcctctttgacatacacaacatgtttccctttgcagacaaacaaccgtgtcttatgttcttcagcttcaacatgcttaaaaccagaggcagctc |
238 |
Q |
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||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| |||| |||||| || |||| ||||||||||| ||| ||| |
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| T |
15965023 |
aaacttgcctctttgacatgtacaacatgtttccctctgcatacaaacaaccgtgtcttgtgtttttcagcctcggcatgtttaaaaccagaagcaactc |
15965122 |
T |
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| Q |
239 |
caccttcttgtggtataatacatggtttgaaatatgacaggaacttctgagtttcatgaccctgtacttc |
308 |
Q |
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| T |
15965123 |
caccttcttgaggtataatacaaggtttgaaataagaaaggaacttttcagtttcatggccctgtacttc |
15965192 |
T |
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