View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11594_low_18 (Length: 249)

Name: NF11594_low_18
Description: NF11594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11594_low_18
NF11594_low_18
[»] chr3 (2 HSPs)
chr3 (162-239)||(7234863-7234940)
chr3 (19-63)||(7234720-7234764)
[»] chr8 (2 HSPs)
chr8 (201-231)||(26365657-26365687)
chr8 (201-231)||(30641726-30641756)
[»] chr4 (1 HSPs)
chr4 (162-234)||(45405248-45405320)


Alignment Details
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 7234863 - 7234940
Alignment:
Q  162 gacctcatgtgaccacctaatgatttaccagaagcaaaactttttctgcagaatttgcacacatgtttcaatttcatc 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7234863 gacctcatgtgaccacctaatgatttaccagaagcaaaactttttctgcagaatttgcacacatgtttcaatttcatc 7234940  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 7234720 - 7234764
Alignment:
Q  19 tgagtactctccaagttttctttggattctctctaagaccataac 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  7234720 tgagtactctccaagttttctttggattctctctaagaccataac 7234764  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 231
Target Start/End: Original strand, 26365657 - 26365687
Alignment:
Q  201 ctttttctgcagaatttgcacacatgtttca 231  Q
    |||||||||||||||||||||||||||||||    
T  26365657 ctttttctgcagaatttgcacacatgtttca 26365687  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 231
Target Start/End: Complemental strand, 30641756 - 30641726
Alignment:
Q  201 ctttttctgcagaatttgcacacatgtttca 231  Q
    |||||||||||||||||||||||||||||||    
T  30641756 ctttttctgcagaatttgcacacatgtttca 30641726  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 45405248 - 45405320
Alignment:
Q  162 gacctcatgtgaccacctaatgatttaccagaagcaaaactttttctgcagaatttgcacacatgtttcaatt 234  Q
    |||||||||||||| ||||| ||| ||||| ||| ||| ||||| || |||||||||||  ||||||| ||||    
T  45405248 gacctcatgtgacctcctaaagatctaccacaaggaaagcttttgctacagaatttgcaagcatgtttgaatt 45405320  T

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