View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11594_low_19 (Length: 247)
Name: NF11594_low_19
Description: NF11594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11594_low_19 |
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| [»] scaffold1152 (1 HSPs) |
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Alignment Details
Target: scaffold1152 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold1152
Description:
Target: scaffold1152; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 1772 - 1992
Alignment:
| Q |
11 |
cagagagagtgtgtgagaatgggaactcgtcgtcgaaggagaaccgaagaagaatcagcttcttctgacggtgaagatggcagctcagccaccaccgaaa |
110 |
Q |
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| T |
1772 |
cagagagagtgtgtgagaatgggaactcgtcgtcgaaggagaaccgaagaagaatcaacttcttctaaccgtgaagatggcagcccagccaccaccgaaa |
1871 |
T |
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| Q |
111 |
ccaaaacggcgaaaactgacagtgacaaaggtgttgtcgttttgggttcatcatcatattacgaacagattagggaacaaaggatgaaagagaacgctga |
210 |
Q |
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| T |
1872 |
ccaaaacggcgaaaactgacggtgacaaaggtgttgtagttttgggttcatcatcatattacgaatagattagggaacaaaggatgaaagagaacgctga |
1971 |
T |
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| Q |
211 |
gagaatgtataagcttggatt |
231 |
Q |
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| T |
1972 |
gagaatgcataagcttggatt |
1992 |
T |
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Back To:
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Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 34199586 - 34199803
Alignment:
| Q |
14 |
agagagtgtgtgagaatgggaactcgtcgtcgaaggagaaccgaag---aagaatcagcttcttctgacggtgaagatggcagctcagccaccaccgaaa |
110 |
Q |
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| T |
34199586 |
agagagtgtgagagaatgggaactcgtcgtagaaggagaagcgaagaagaagaatcagcttcttctgacggtgaagatggcggcgcagccaccaccgaaa |
34199685 |
T |
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| Q |
111 |
ccaaaacggcgaaaactgacagtgacaaaggtgttgtcgttttgggttcatcatcatattacgaacagattagggaacaaaggatgaaagagaacgctga |
210 |
Q |
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| T |
34199686 |
ccaaaacggagaaaactaacggtgacgaaggtgttgtcgtttcaggttcatcatcgcattacgaacggattagggaacaaaggatggaagagaacgctga |
34199785 |
T |
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| Q |
211 |
gagaatgtataagcttgg |
228 |
Q |
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| T |
34199786 |
gagaatgcataagcttgg |
34199803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 40812075 - 40812248
Alignment:
| Q |
14 |
agagagtgtgtgagaatgggaactcgtcgtcgaaggagaaccgaagaagaatcagcttcttctgacggtgaagatggcagctcagccaccaccgaaacca |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||| |
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| T |
40812075 |
agagagtgtgtgagaatgggaactcgtcgtcgaaggagaaccgaagaagaatcagcttcttctgacggtgaagatggcagcgcaaccaccaacgaaacca |
40812174 |
T |
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| Q |
114 |
aaacggcgaaaactgacagtgacaaaggtgttgtcgttttgggttcatcatcatattacgaacagattagggaa |
187 |
Q |
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||||||||||||||||| ||||| ||||||||| ||||| |||||||||||| |||||||||||||||||||| |
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| T |
40812175 |
aaacggcgaaaactgacggtgacgaaggtgttgccgtttctggttcatcatcacattacgaacagattagggaa |
40812248 |
T |
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