View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11594_low_2 (Length: 518)

Name: NF11594_low_2
Description: NF11594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11594_low_2
NF11594_low_2
[»] chr6 (15 HSPs)
chr6 (16-500)||(5100251-5100734)
chr6 (16-291)||(5135559-5135835)
chr6 (125-347)||(5351846-5352065)
chr6 (329-500)||(2939463-2939631)
chr6 (133-263)||(5242120-5242249)
chr6 (138-283)||(5398520-5398660)
chr6 (25-100)||(5351780-5351855)
chr6 (138-202)||(5687599-5687661)
chr6 (125-199)||(5334567-5334640)
chr6 (199-291)||(5155662-5155755)
chr6 (465-500)||(5135525-5135560)
chr6 (198-247)||(2939370-2939419)
chr6 (200-230)||(5098691-5098721)
chr6 (329-399)||(5155594-5155663)
chr6 (302-346)||(5427325-5427369)
[»] chr3 (4 HSPs)
chr3 (138-229)||(47985060-47985151)
chr3 (138-229)||(47994347-47994438)
chr3 (138-229)||(48003634-48003725)
chr3 (138-229)||(48012919-48013010)
[»] scaffold1476 (1 HSPs)
scaffold1476 (17-62)||(183-228)


Alignment Details
Target: chr6 (Bit Score: 406; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 16 - 500
Target Start/End: Complemental strand, 5100734 - 5100251
Alignment:
Q  16 atgaatcaatgaaagatagtaaagcgatggccgagcaaaaatcaattttatgatgactgctaacaattgttttccacttatggcttacaggtcgctctgt 115  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |  ||| |||    
T  5100734 atgaatcaatgaaagatagtaatgcaatggccgagcaaaaatcaattttatgatgactgctaacaattgttttccatttttggcttacaagctgctttgt 5100635  T
Q  116 cattgtctgatttttggtctgtagtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaatt 215  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5100634 cattgtctgatttttggtctgtagtttctagattttatccttggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaatt 5100535  T
Q  216 cttccatgtcatataccatttaaatgtcttttaacaaaatggactcaaatag-tatagcatttaaatgtttagcaaaacttctgtagtcctaaataatag 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  5100534 cttccatgtcatataccatttaaatgtcttttaacaaaatggactcaaatagttatagcatttaaatgtttagc-aaacttctgtagtcctaaataatag 5100436  T
Q  315 gatatatagctgccaagaataaactctgatttgaacaatgagcatttttacctcagcatcagattttatagttatatggctcaagctcatttcctttgct 414  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5100435 gatatatagctgccaagaagaaactctgatttgaacaatgagca-ttttacctcagcatcaggttttatagttatatggctcaagctcatttcctttgct 5100337  T
Q  415 gcagaaaccttcataactttatctttgagttaacatttatttttgtccctaacggtgtaaggcgctctcattatagaccctgaatg 500  Q
    |||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5100336 gcagaaaccttcataactttattttttagtaaacatttatttttgtccctaacggtgtaaggcgctctcattatagaccctgaatg 5100251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 5135835 - 5135559
Alignment:
Q  16 atgaatcaatgaaagatagtaaagcgatggccgagcaaaaatcaattttatgatgactgctaacaattgttttccacttatggcttacaggtcgctctgt 115  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |  |||||||    
T  5135835 atgaatcaatggaagatagtaaagcaatggccgagcaaaaatcaattttatgatgactgctaacaattgttttccatttttggcttacaagctgctctgt 5135736  T
Q  116 cattgtctgatttttggtctgtagtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaatt 215  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5135735 cattgtctgatttttggtctgtagtttctagattttattcttggtgaatttttgtattcaaaaagagttctgaaagattctaatttgttctgttacaatt 5135636  T
Q  216 cttccatgtcatataccatttaaatgtcttttaacaaaatggactcaaatag-tatagcatttaaatgtttagcaaa 291  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5135635 cttccatgttatataccatttaaatgtcttttaacaaaatggactcaaatagttatagcatttaaatgtttagcaaa 5135559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 125 - 347
Target Start/End: Original strand, 5351846 - 5352065
Alignment:
Q  125 atttttggtctgtagtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgt 224  Q
    |||||||| ||||||||||| ||||||||||  | ||||||||| ||||||||||||||  |||||||||||||||||||||||||||||| ||||||||    
T  5351846 atttttgg-ctgtagtttcttgattttatccatgttgaattttt-tattcacaaagagtggtgaaagattctaatttgttctgttacaattgttccatgt 5351943  T
Q  225 catataccatttaaatgtcttttaacaaaatggactcaaatag-tatagcatttaaatgtttagcaaaacttctgtagtcctaaataataggatatatag 323  Q
    ||| ||| ||||||| ||||||||||||||||| ||   |||| || |||||||||||||| || ||| |||||||| || | ||| |||| ||||||      
T  5351944 catgtactatttaaaagtcttttaacaaaatgggct-ttatagttacagcatttaaatgttaag-aaagcttctgtactcatgaatgatagcatatatga 5352041  T
Q  324 ctgccaagaataaactctgatttg 347  Q
    |||||||||| |||||||||||||    
T  5352042 ctgccaagaagaaactctgatttg 5352065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 329 - 500
Target Start/End: Original strand, 2939463 - 2939631
Alignment:
Q  329 aagaataaactctgatttgaacaatgagcatttttacctcagcatcagattttatagttatatggctcaagctcatttcctttgctgcagaaaccttcat 428  Q
    ||||| |||||||||||||| || |||||||||| |||||||||||||| |  |||||||| | |||||||||||||||| ||||| ||||| |||||||    
T  2939463 aagaagaaactctgatttgagcagtgagcatttt-acctcagcatcagactccatagttatcttgctcaagctcatttccattgctacagaagccttcat 2939561  T
Q  429 aactttatctttgagttaacatttatttttgtccctaacggtgtaaggcgctctcattatagaccctgaatg 500  Q
    ||| |||| ||||||| |||||||||||| ||||||||| ||||  | ||||| || |||||||||||||||    
T  2939562 aaccttatttttgagtaaacatttattttggtccctaacagtgt--gtcgctcacactatagaccctgaatg 2939631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 133 - 263
Target Start/End: Complemental strand, 5242249 - 5242120
Alignment:
Q  133 tctgtagtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatatacc 232  Q
    |||||||||||||||||||||||  ||||||||||| |||| ||| |||||  |||||| |||||||||||| ||||| ||||||| |||||||| ||||    
T  5242249 tctgtagtttctagattttatccatggtgaattttt-tattgacagagagtggtgaaagtttctaatttgttatgttataattctttcatgtcatgtacc 5242151  T
Q  233 atttaaatgtcttttaacaaaatggactcaa 263  Q
    ||||||||||||||||||||||||| |||||    
T  5242150 atttaaatgtcttttaacaaaatgggctcaa 5242120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 138 - 283
Target Start/End: Original strand, 5398520 - 5398660
Alignment:
Q  138 agtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatataccattta 237  Q
    ||||||||||||||||||  ||||||||||| ||||||    ||||  |||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  5398520 agtttctagattttatccatggtgaattttt-tattca----gagtggtgaaagattctaatttgttctgttacaattcttccatgtcatgtactattta 5398614  T
Q  238 aatgtcttttaacaaaatggactcaaatag-tatagcatttaaatgt 283  Q
    || |||||||||| |||||||||| ||||| |||||||||| |||||    
T  5398615 aaagtcttttaactaaatggactc-aatagttatagcatttcaatgt 5398660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 5351780 - 5351855
Alignment:
Q  25 tgaaagatagtaaagcgatggccgagcaaaaatcaattttatgatgactgctaacaattgttttccacttatggct 100  Q
    |||||||||||||||| ||||| |||||||||||||||||||| |||| |||||||||||||||||| || |||||    
T  5351780 tgaaagatagtaaagcaatggcggagcaaaaatcaattttatggtgacggctaacaattgttttccatttttggct 5351855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 5687599 - 5687661
Alignment:
Q  138 agtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttg 202  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||    
T  5687599 agtttctagattttatcc--ggtgaatttttgtattcacaaagagttttgaaagattctaatttg 5687661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 125 - 199
Target Start/End: Original strand, 5334567 - 5334640
Alignment:
Q  125 atttttggtctgtagtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaat 199  Q
    |||||||| ||| ||||||||||||||||||  ||||||||||||||||||||||||||  ||||||||||||||    
T  5334567 atttttgg-ctgaagtttctagattttatccatggtgaatttttgtattcacaaagagtggtgaaagattctaat 5334640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 199 - 291
Target Start/End: Complemental strand, 5155755 - 5155662
Alignment:
Q  199 tttgttctgttacaattcttccatgtcatataccatttaaatgtc-ttttaacaaaatggactcaaatag-tatagcatttaaatgtttagcaaa 291  Q
    |||||||||||||||||| |||||||||  |||||||||||| || ||||||| |||||||||  ||||| ||||| || |||||||||||||||    
T  5155755 tttgttctgttacaattcgtccatgtcacgtaccatttaaatatctttttaaccaaatggact-gaatagctatagtatctaaatgtttagcaaa 5155662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 465 - 500
Target Start/End: Complemental strand, 5135560 - 5135525
Alignment:
Q  465 aacggtgtaaggcgctctcattatagaccctgaatg 500  Q
    ||||||||||||||||||||||||||||||||||||    
T  5135560 aacggtgtaaggcgctctcattatagaccctgaatg 5135525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 2939370 - 2939419
Alignment:
Q  198 atttgttctgttacaattcttccatgtcatataccatttaaatgtctttt 247  Q
    |||||||||||||| |||| |||||||||| |||||||||||| ||||||    
T  2939370 atttgttctgttacgattcatccatgtcatgtaccatttaaatatctttt 2939419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 230
Target Start/End: Original strand, 5098691 - 5098721
Alignment:
Q  200 ttgttctgttacaattcttccatgtcatata 230  Q
    |||||||||||||||||||||||||||||||    
T  5098691 ttgttctgttacaattcttccatgtcatata 5098721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 399
Target Start/End: Complemental strand, 5155663 - 5155594
Alignment:
Q  329 aagaataaactctgatttgaacaatgagcatttttacctcagcatcagattttatagttatatggctcaag 399  Q
    ||||| ||| |||||||||| ||||||||| |||||||||||||||||| |  |||||||| | |||||||    
T  5155663 aagaagaaaatctgatttgagcaatgagca-ttttacctcagcatcagactccatagttatcttgctcaag 5155594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 5427325 - 5427369
Alignment:
Q  302 tcctaaataataggatatatagctgccaagaataaactctgattt 346  Q
    |||| ||| ||||||||||| ||||||||||| ||||||||||||    
T  5427325 tcctgaatgataggatatatggctgccaagaagaaactctgattt 5427369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 47985151 - 47985060
Alignment:
Q  138 agtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatat 229  Q
    |||||||||||||||| |  ||| |||||||||| ||  |||||    |||||||||  |||||||| |||||||||||||||| |||||||    
T  47985151 agtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttccacgtcatat 47985060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 47994438 - 47994347
Alignment:
Q  138 agtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatat 229  Q
    |||||||||||||||| |  ||| |||||||||| ||  |||||    |||||||||  |||||||| |||||||||||||||| |||||||    
T  47994438 agtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttccacgtcatat 47994347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 48003725 - 48003634
Alignment:
Q  138 agtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatat 229  Q
    |||||||||||||||| |  ||| |||||||||| ||  |||||    |||||||||  |||||||| |||||||||||||||| |||||||    
T  48003725 agtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttccacgtcatat 48003634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 48013010 - 48012919
Alignment:
Q  138 agtttctagattttatcctgggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatat 229  Q
    |||||||||||||||| |  ||| |||||||||| ||  |||||    |||||||||  |||||||| |||||||||||||||| |||||||    
T  48013010 agtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttccacgtcatat 48012919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1476 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 183 - 228
Alignment:
Q  17 tgaatcaatgaaagatagtaaagcgatggccgagcaaaaatcaatt 62  Q
    |||||||||||||||| ||||| | ||||| |||||||||||||||    
T  183 tgaatcaatgaaagatggtaaaacaatggcggagcaaaaatcaatt 228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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