View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11594_low_20 (Length: 246)
Name: NF11594_low_20
Description: NF11594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11594_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 37892551 - 37892315
Alignment:
| Q |
1 |
aacaagttctaatggtaagaggtttgagctaccaaactttgacatctgtaagaataaagaaatcgttccgtctaaaccctaaac-------tctaaaaaa |
93 |
Q |
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| T |
37892551 |
aacaagttctaatggtaagaggtttgagctaccaaactttgacatctgtaagaataaagaaatcgtccggtctaaaccctaaaccctaaactctaaaaaa |
37892452 |
T |
|
| Q |
94 |
cctaaccaaacataatttgaactacaatttgaaggtaagtcctgtttctaggagtttacttccacaacagtatgtatggcataagtggataccatttcag |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37892451 |
actaaccaaacataatttgaactacaatttgaaggtaagtcctgtttctaggagtttacttccacaacagtatgtatggcataagtggataccatttcag |
37892352 |
T |
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| Q |
194 |
ggaaaaataacaaaagatcaatcaatttcaatatatt |
230 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
37892351 |
ggaaaaataacaaaagatcaatcaatttcaatatatt |
37892315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 120 - 230
Target Start/End: Complemental strand, 37187574 - 37187464
Alignment:
| Q |
120 |
atttgaaggtaagtcctgtttctaggagtttacttccacaacagtatgtatggcataagtggataccatttcagggaaaaataacaaaagatcaatcaat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37187574 |
atttgaaggtaagtcctgtttctaggagtttacttccataacagtatgtatggcataagtggataccatttcagggaaaaataacaaaagaccaatcaat |
37187475 |
T |
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| Q |
220 |
ttcaatatatt |
230 |
Q |
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||||||||||| |
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| T |
37187474 |
ttcaatatatt |
37187464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37187621 - 37187575
Alignment:
| Q |
1 |
aacaagttctaatggtaagaggtttgagctaccaaactttgacatct |
47 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
37187621 |
aacaagttctaatggtaagaggtttgagctgtccaactttgacatct |
37187575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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