View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11594_low_3 (Length: 469)
Name: NF11594_low_3
Description: NF11594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11594_low_3 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 102 - 453
Target Start/End: Original strand, 41388082 - 41388433
Alignment:
| Q |
102 |
ttggttcaatatctatggctattttatgattaaattctgattgaaaactttatattaatatgtggaggtattgttctggactctggagatggtgtcagcc |
201 |
Q |
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| T |
41388082 |
ttggttcaatatctatggctattttatgattaaattctgattgaaaactttatattaatatgtgcaggtattgttctggactctggagatggtgtcagcc |
41388181 |
T |
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| Q |
202 |
acactgtaccaatctacgaaggatatgcccttccacatgctatccttcgtcttgatttagcagggcgtgacctcactgatgccttgatgaaaatccttac |
301 |
Q |
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| T |
41388182 |
acactgtaccaatctacgaaggatatgcccttccacatgctatccttcgtcttgatttagcagggcgtgacctcactgatgccttgatgaaaatccttac |
41388281 |
T |
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| Q |
302 |
cgagcgtggttattctttcactaccacagccgagcgtgaaattgtaagagatgtgaaggaaaagctgtcttatattgcccttgattttgagcaagagctt |
401 |
Q |
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| T |
41388282 |
cgagcgtggttattctttcactaccacagccgagcgtgaaattgtaagagatgtgaaggaaaagctgtcttatattgcccttgattttgagcaagagctt |
41388381 |
T |
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| Q |
402 |
gaaacttcaaaaacaagttctgctgttgagaagagctatgagcttcctgatg |
453 |
Q |
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| T |
41388382 |
gaaacttcaaaaacaagttctgctgttgagaagagctatgagcttcctgatg |
41388433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 41387989 - 41388043
Alignment:
| Q |
18 |
gatatatggagcagatattgaatgtgagttaagaagtctagttaagttcacaggg |
72 |
Q |
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| T |
41387989 |
gatatatggagcagatattgaatgtgagttaagaagtctagttaagttcacaggg |
41388043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 167 - 453
Target Start/End: Original strand, 68183 - 68469
Alignment:
| Q |
167 |
aggtattgttctggactctggagatggtgtcagccacactgtaccaatctacgaaggatatgcccttccacatgctatccttcgtcttgatttagcaggg |
266 |
Q |
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|||||||||||| || ||||||||||||||||||||||| || || ||||| |||||||||||||||||||| || ||||| ||| | ||| | ||||| |
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| T |
68183 |
aggtattgttcttgattctggagatggtgtcagccacacagttcctatctatgaaggatatgcccttccacacgcaatcctgcgtttggatcttgcaggt |
68282 |
T |
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| Q |
267 |
cgtgacctcactgatgccttgatgaaaatccttaccgagcgtggttattctttcactaccacagccgagcgtgaaattgtaagagatgtgaaggaaaagc |
366 |
Q |
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| T |
68283 |
cgtgatctcacagacgccctcatgaaaatcttaaccgagcgtggatactctttcaccacaacagccgagcgtgaaatcgtgagagacgtgaaggaaaaac |
68382 |
T |
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| Q |
367 |
tgtcttatattgcccttgattttgagcaagagcttgaaacttcaaaaacaagttctgctgttgagaagagctatgagcttcctgatg |
453 |
Q |
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| T |
68383 |
tatcctacattgctcttgattatgaacaagagttagaaacctcgaagacgagctcagctgttgagaagagctatgagttacctgatg |
68469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 167 - 453
Target Start/End: Complemental strand, 59625 - 59339
Alignment:
| Q |
167 |
aggtattgttctggactctggagatggtgtcagccacactgtaccaatctacgaaggatatgcccttccacatgctatccttcgtcttgatttagcaggg |
266 |
Q |
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| T |
59625 |
aggtattgtgttggattctggtgatggtgtcagccacacagtccctatctacgagggttatgccctcccacacgccatccttcgtcttgatttggctggt |
59526 |
T |
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| Q |
267 |
cgtgacctcactgatgccttgatgaaaatccttaccgagcgtggttattctttcactaccacagccgagcgtgaaattgtaagagatgtgaaggaaaagc |
366 |
Q |
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| T |
59525 |
cgtgacctgactgattacatgatgaaaattctgacagaacgtggttattcttttaccacctcagcagagcgtgaaattgtgagggatatgaaggaaaagc |
59426 |
T |
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| Q |
367 |
tgtcttatattgcccttgattttgagcaagagcttgaaacttcaaaaacaagttctgctgttgagaagagctatgagcttcctgatg |
453 |
Q |
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| T |
59425 |
tggcttacattgcccttgactatgagcaagagctagagacatccaagaccagctctgcagtggagaagagctatgagttgcctgatg |
59339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 167 - 453
Target Start/End: Complemental strand, 37050806 - 37050520
Alignment:
| Q |
167 |
aggtattgttctggactctggagatggtgtcagccacactgtaccaatctacgaaggatatgcccttccacatgctatccttcgtcttgatttagcaggg |
266 |
Q |
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||||||||||||||| ||||| |||||||| |||||||| || || || ||||| |||||||| ||||||||||| ||||||||| | ||| | ||||| |
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| T |
37050806 |
aggtattgttctggattctggggatggtgttagccacacggttcctatttacgagggatatgcacttccacatgcaatccttcgtttggatcttgcaggt |
37050707 |
T |
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| Q |
267 |
cgtgacctcactgatgccttgatgaaaatccttaccgagcgtggttattctttcactaccacagccgagcgtgaaattgtaagagatgtgaaggaaaagc |
366 |
Q |
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| T |
37050706 |
cgtgatctcactgatgcattgatgaagattttaaccgagcgtggctacactttcaccacttcagcagagcgagaaattgtaagggatatgaaggagaaat |
37050607 |
T |
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| Q |
367 |
tgtcttatattgcccttgattttgagcaagagcttgaaacttcaaaaacaagttctgctgttgagaagagctatgagcttcctgatg |
453 |
Q |
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| T |
37050606 |
tggcttatattgctcttgattacgagcaggagttggaaactgctaaaactagctcagctgttgagaagacctatgagctacctgatg |
37050520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 167 - 400
Target Start/End: Original strand, 8689568 - 8689801
Alignment:
| Q |
167 |
aggtattgttctggactctggagatggtgtcagccacactgtaccaatctacgaaggatatgcccttccacatgctatccttcgtcttgatttagcaggg |
266 |
Q |
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||||||||| |||| ||||| |||||||||||||||||||| || |||||||| || ||||||||||||||||| ||||||||||||||| | || || |
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| T |
8689568 |
aggtattgtgttggattctggtgatggtgtcagccacactgtccccatctacgagggttatgcccttccacatgccatccttcgtcttgatctggctggt |
8689667 |
T |
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| Q |
267 |
cgtgacctcactgatgccttgatgaaaatccttaccgagcgtggttattctttcactaccacagccgagcgtgaaattgtaagagatgtgaaggaaaagc |
366 |
Q |
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| T |
8689668 |
cgtgaccttaccgatttcttgatgaagattttgactgaacgtggttattcttttaccacctcagcagagcgagaaattgttcgtgacgtgaaagaaaagc |
8689767 |
T |
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| Q |
367 |
tgtcttatattgcccttgattttgagcaagagct |
400 |
Q |
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| T |
8689768 |
tttcatacattgcccttgactatgagcaagagct |
8689801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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